Modeling Biological Systems: Difference between revisions
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== Slides == | == Slides == | ||
*[http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/RecapFeb09.pptx Architecture and Layering in Biology] | |||
*[http://www.cds.caltech.edu/~doyle/213/MinimalCell.pptx Minimal Cell Model] | |||
== Reading == | == Reading == | ||
*[http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/Faeder_2009.pdf <i>Rule-Based Modeling of Biochemical Systems with BioNetGen</i>, Faeder, Blinov and Hlavacek] | *[http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/Faeder_2009.pdf <i>Rule-Based Modeling of Biochemical Systems with BioNetGen</i>, Faeder, Blinov and Hlavacek] | ||
* [http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/Bioinformatics09a_inpress.pdf Simulation of large-scale rule-based models, Colvin et al.] | * [http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/Bioinformatics09a_inpress.pdf <i>Simulation of large-scale rule-based models</i>, Colvin et al.] | ||
* [http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/FaederPerspectives.pdf The Complexity of Cell Signaling and the Need for a New Mechanics, Hlavacek and Faeder] | * [http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/FaederPerspectives.pdf <i>The Complexity of Cell Signaling and the Need for a New Mechanics</i>, Hlavacek and Faeder] | ||
*[http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/STKE2006.pdf Rules for Modeling Signal-Transduction Systems, Hlavacek et al.] | *[http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/STKE2006.pdf <i>Rules for Modeling Signal-Transduction Systems</i>, Hlavacek et al.] | ||
*[http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/nri-published.pdf Mathematical and Computational Models of Immune-Receptor Signalling, Goldstein et al.] | *[http://www.cds.caltech.edu/~doyle/213/Feb09weekSlidesReading/nri-published.pdf <i>Mathematical and Computational Models of Immune-Receptor Signalling</i>, Goldstein et al.] | ||
Latest revision as of 22:16, 18 February 2010
Topics
Slides
Reading
- Rule-Based Modeling of Biochemical Systems with BioNetGen, Faeder, Blinov and Hlavacek
- Simulation of large-scale rule-based models, Colvin et al.
- The Complexity of Cell Signaling and the Need for a New Mechanics, Hlavacek and Faeder
- Rules for Modeling Signal-Transduction Systems, Hlavacek et al.
- Mathematical and Computational Models of Immune-Receptor Signalling, Goldstein et al.