John C. Doyle - User contributions [en]

Help:Contents

2010-01-28T07:14:59Z

Lun: /* Upload limit */

This page is designed as '''help''' for Prof. Doyle's group to manage, use and edit this wiki.

==About Wiki==
<big>'''[[Special:version|MediaWiki]] has been successfully installed.'''</big>

[http://www.mediawiki.org/wiki/MediaWiki About media Wiki]

In July 2007, this wiki was initially installed by Lun Li.

The wiki pages were initally set up by Prof J Doyle, Lun Li, Lijun Chen, Hana and Lachlan Andrew, with assistance from CDS

This wiki is to document Prof. J. C. Doyle & his groups's research activities.

2007-2008 Wiki admin:
*Hana and Lachlan Andrew from [http://netlab.caltech.edu/people.php Netlab],
*[http://www.cds.caltech.edu/~lun/ Lun Li] and Lijun Chen from [[Group|CDS]] and [http://netlab.caltech.edu/ Netlab], at [http://www.caltech.edu Caltech]
*Prof Doyle

==Using Wiki==
<big>'''MediaWiki has been successfully installed.'''</big>

*Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.

* [http://www.mediawiki.org/wiki/Help:Configuration_settings Configuration settings list]
* [http://www.mediawiki.org/wiki/Help:FAQ MediaWiki FAQ]
* [http://mail.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
* [http://www.mediawiki.org/wiki/Help:Contents MediaWiki Help list]
* The menus on the left are controlled by [[Mediawiki:Sidebar]]

==Editing Wiki==
* Editing this wiki has been restricted to those logged in with an existing [http://www.mediawiki.org/wiki/Help:Navigation#User_links "User account"], where the [http://www.mediawiki.org/wiki/Help:Navigation#Page_Tabs "edit tabs"] at the top of the page should appear after log-in.
** You can edit a page or section on a page by clicking on "edit" tabs.
**After typing your updates to the editing box on any page, use the "show preview" button to preview your editing/links!
*Useful URL's for wiki markup/editing tips:
**<http://www.mediawiki.org/wiki/>:
**<http://meta.wikimedia.org/wiki/>
**[http://www.mediawiki.org/wiki/Help MediaWiki Help list]
**[http://www.mediawiki.org/wiki/Help:Editing_pages Editing pages MediaWiki Help Editing pages]

==Wiki support==
*[[Main Page#Contact|Contact]] webmasters: Prof. John Doyle, [[Group|CDS group]], [http://www.cds.caltech.edu/contact/ Sysadmin at CDS]

or [http://netlab.caltech.edu/contact.php Hana & Lachlan at Netlab, CS]

or [http://www.cds.caltech.edu/contact/ contact CDS]

==Sysops topics==
*The source files for this wiki folder name: '''___''' are mounted onto '''file server:___''' and edited/hosted via '''web server:___''' at CDS, Caltech.
* This wiki URL is <http://www.cds.caltech.edu/~doyle2/wiki/>
* The common CSS definitions can be edited at MediaWiki:Common.css
* [[To Do]] page lists tasks and suggestions for maintaining and updating the wiki.
* Sidebar can be edited at [[MediaWiki:Sidebar]]. For instructions, see <http://www.mediawiki.org/wiki/Manual:Navigation_bar>.
* To change an Infobox template, create a page in the '''Template:''' namespace.
*Paste contents from small page onto a larger page by typing <nowiki> {{:small page name}} </nowiki> onto larger page
*Starting a new page labelled <nowiki>[[Private: ___]]</nowiki> denotes private page requiring restricted password
*More useful links for Sysops topics already listed in sections above.

===Linux commands===
*To view instructions on changing file permissions on Unix, type '''man chmod''' on the Linux command line. Then admin can choose which files are w= writable, R=readable etc by admin or group. If in doubt ask Lun or CDS sysadmin!
*ssh to website, then type in '''cd ..''' enter then '''ln -s hanas_site/filename.php''' creates symbolic link to Hana's Netlab website stored at CS, Caltech.
*For linux users, a short summary of usage can be obtained by typing
<command> --help
into the linux command line.

===Special pages===
*[[Special:Specialpages]] lists links to pages important to managing this wiki, for example,
**[[Special:Userlogin|to log-in/create account]]
**[[Special:Version|to check information about this mediawiki/MySQL/PHP behind this website]]
**[[Special:Recentchanges|to view/control recent changes]]

===Error messages===
* 404 Not Found is an error message when non-existent URL is typed into the browser, ie webpage not found
* 403 Access forbidden, ie when user is not allowed access to some pages

===Create account / Restricting User Level===
Accounts for this wiki have been given mostly to [[Group|Prof. Doyle's group]] and some [http://netlab.caltech.edu/people.php Netlab members].

Editing has been limited to users logged in existing user account and user levels have been restricted in some accounts.

See also section above '''Linux commands''', on ''changing file permissions''!

[[Special:Specialpages]] has pages important to managing user accounts, for example
*[[Special:Userlogin|to log-in/create account]]
**On this wiki, login as a ''Sysops'' user => [[Special:Specialpages|''Special pages'']] => [[Special:Userlogin|"Login/Create Account"]] => ''Create Account'', fill in the fields.
*[[Special:Blockip|block user]]

Useful instructions from <http://meta.wikimedia.org/wiki/> and <http://www.mediawiki.org/wiki/>:
*[http://meta.wikimedia.org/wiki/MediaWiki_FAQ#User_administration Administering user rights]
*[http://www.mediawiki.org/wiki/Manual:FAQ#How_do_I_administrate.2Fmanage_user_rights.3F Managing/administering/restricting user rights]
*[http://www.mediawiki.org/wiki/Manual:FAQ#How_do_I_reset_a_password.3F Reset password]
*[http://www.mediawiki.org/wiki/Manual:FAQ#How_do_I_remove_the_article.2Fedit_etc_tabs_for_users_who_are_not_logged_in.3F Removing tabs to users not logged in]

==Upload file==
===Upload limit===
*[http://www.mediawiki.org/wiki/Manual:Configuring_file_uploads#Set_maximum_size_for_file_uploads Know Media Wiki upload limit 8MB]

===More upload tips===
*Upload file onto this wiki by click on "Upload file" option in Toolbox on the [[MediaWiki:Sidebar]]
* Once the file has been uploaded, remember to acknowledge the '''source''' or '''bibliography''' details on the upload page, and ensure it does not violate copyright and related issues!
*pdf, ppt, jpg are formats can now be uploaded to this wiki, after implementing relevant code in LocalSettings.php

==Images==
===Thumbnails===
To install software to create thumbnails on this mwiki,

* follow instructions on [http://meta.wikimedia.org/wiki/MediaWiki_FAQ#How_do_I_install_Imagemagick_for_Thumbnails_on_Windows_-_MAR_2006_.3F MediaWiki:Help for creating thumbnails]
* edit code in file below, as instructed
...\mwiki\localsettings.php
* ensure the ImageMagick version that you choose to download is compatible with [[Special:Version|this wiki version]] listed above
* create folder "ImageMagick" on CDS server IP: ??? C:\program files
* onto this ImageMagick folder, download [http://www.imagemagick.org/download/www/binary-releases.html ImageMagick]

===Add Images===
...\mwiki\localsettings.php
was edited to enable '''file uploading''' from the Toolbox on the Sidebar.
*Upload image as instructed in section '''more upload tips''' above.
* [http://www.mediawiki.org/wiki/Help:Images MediaWiki:Help Adding images]

===Find images in wiki===
To lists all the image files (jpg, pdf, etc) on this wiki, click on [[Special:Specialpages|Special pages]] on sidebar, then select [[Special:Allpages|All pages]], then on this page select '''image''' in the '''Namespace''' box (pull down menu), and lastly select '''Go'''.

==Navigation==
===Creating a redirect===
Re-directs are useful for searching for specific page by various keywords or other alternative names.

To create a redirect, you must start a new page with the name you want to direct from. Do this by typing the desired name into the search box, or straight into the URL (methods described on Help:Starting a new page)

For the text of the new page, enter the following:

#REDIRECT <nowiki>[[pagename]]</nowiki>

where pagename is the name of the page you want to redirect users to.


You can use the 'preview' button, to check that you have entered the correct page name (Generally you will be redirecting to an existing page name, so the link should be blue, not red)

* Redirect page to another page: On "Old wiki page" type in #REDIRECT <nowiki>[[New page link ]]</nowiki>

===Categories===
*<nowiki>[[Category:___]]</nowiki> files page under new or old category, very useful for grouping pages by category!
===Side bar===
[[Special:Categories]], [[Special:All articles]], '''Wiki help''' was added to side bar to list all pages by category and by article - quicker for user to find specific pages.

==Other features that could be added to wiki==
===Case Sensitivity===
To make page titles and usernames case-sensitive, added ''$wgCapitalLinks = false;'' to Local settings.php

===Social networking bookmarks===
http://www.mediawiki.org/wiki/Extension:ShareThis for downloads and adding social networking bookmarks like <http://digg.com/> and <http://www.reddit.com/>

==John Doyle's other homepages==
*<http://www.cds.caltech.edu/~doyle/>
*<http://www.cds.caltech.edu/~doyle/home.htm>

Main Page

2008-08-28T15:47:17Z

Lun: /* Research */

<table border=1 width=100% style="color:black; " cellpadding="20" cellspacing="0">
<tr>
<td align=center width=20%> [[Image:doyle.jpg]]</td>
<td width=60% align=center>
John C. Doyle 

John G Braun Professor 
of Control and Dynamical Systems 
Electrical Engineering 
and BioEngineering 
Division of Engineering and Applied Science 
California Institute of Technology 

</td>
<td align=center width=20%>


[[J. Doyle’s Bio]]

[[News]]

[[Calendar]]

[[#Contact|Contact]]

[https://www.cds.caltech.edu/squirrelmail/src/login.php CDS Webmail]
</td>
</tr></table>
{| align=center
|[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]
|}
<hr>

==Papers==
*[http://discovermagazine.com/2007/nov/this-man-wants-to-control-the-internet Discover magazine] interviews Prof. Doyle.

"This man wants to control the internet" by Carl Zimmer, Discover magazine, 10/25/2007.
*favourite papers
*[[Papers|'''More Papers''']]

== Research ==
John Doyle's [[research]] interests are in theoretical foundations for complex networks in engineering and biology, as well as multiscale physics, and include integrating modeling, ID, analysis and design of uncertain nonlinear systems, and computation in analysis and simulation, including complexity theory to guide algorithm development. Applications interests are motivated by the interplay between: control, dynamical systems, and design and analysis of large, complex systems."[http://www.cds.caltech.edu/people/ from http://www.cds.caltech.edu/people/ Aug 16, 2008]

*[http://www.cds.caltech.edu/~dennice/fluids/index.php?title=Main_Page Fluids]
*[http://openwetware.org/wiki/Doyle Physiology hosted at Openwetware.org]
**[[Physiology]]
*[[Systems Verification]]

== Contact ==
{| width=100%
|- valign=top
| width=50% |

'''Mailing Address'''

John Doyle 
California Institute of Technology 
Control and Dynamical Systems, MC 107-81 
1200 E. California Blvd 
Pasadena, CA 91125 USA
| width=50% |

'''Contact information'''

E-mail: doyle AT cds dot caltech dot edu 
Office: 109 Steele, 
Phone: 626.395.4808 Fax: 626.395.6170 

'''Assistant''': 
Labs: 12 STL, 110 GUG (x2319)
|-
|

===Other Caltech links===

*[http://www.caltech.edu California Institute of Technology]
**[http://www.eas.caltech.edu Engineering and Applied Science Division]
***[http://www.be.caltech.edu/ Bioengineering Department]
***[http://www.cds.caltech.edu Control and Dynamical Systems Department]
***[http://www.ee2.caltech.edu/ Electrical Engineering Department]
|}

Help:Contents

2008-08-28T15:45:36Z

Lun: /* About Wiki */

This page '''help''' for Prof. Doyle's group to manage, use and edit this wiki.

==About Wiki==
<big>'''[[Special:version|MediaWiki]] has been successfully installed.'''</big>

[http://www.mediawiki.org/wiki/MediaWiki About media Wiki]

In July 2007, this wiki was initially installed by Lun Li.

The wiki pages were initally set up by Prof J Doyle, Lun Li, Lijun Chen, Hana and Lachlan Andrew, with assistance from CDS

This wiki is to document Prof. J. C. Doyle & his groups's research activities.

2007-2008 Wiki admin:
*Hana and Lachlan Andrew from [http://netlab.caltech.edu/people.php Netlab],
*[http://www.cds.caltech.edu/~lun/ Lun Li] and Lijun Chen from [[Group|CDS]] and [http://netlab.caltech.edu/ Netlab], at [http://www.caltech.edu Caltech]
*Prof Doyle

==Using Wiki==
<big>'''MediaWiki has been successfully installed.'''</big>

*Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.

* [http://www.mediawiki.org/wiki/Help:Configuration_settings Configuration settings list]
* [http://www.mediawiki.org/wiki/Help:FAQ MediaWiki FAQ]
* [http://mail.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
* [http://www.mediawiki.org/wiki/Help:Contents MediaWiki Help list]
* The menus on the left are controlled by [[Mediawiki:Sidebar]]

==Editing Wiki==
* Editing this wiki has been restricted to those logged in with an existing [http://www.mediawiki.org/wiki/Help:Navigation#User_links "User account"], where the [http://www.mediawiki.org/wiki/Help:Navigation#Page_Tabs "edit tabs"] at the top of the page should appear after log-in.
** You can edit a page or section on a page by clicking on "edit" tabs.
**After typing your updates to the editing box on any page, use the "show preview" button to preview your editing/links!
*Useful URL's for wiki markup/editing tips:
**<http://www.mediawiki.org/wiki/>:
**<http://meta.wikimedia.org/wiki/>
**[http://www.mediawiki.org/wiki/Help MediaWiki Help list]
**[http://www.mediawiki.org/wiki/Help:Editing_pages Editing pages MediaWiki Help Editing pages]

==Wiki support==
*[[Main Page#Contact|Contact]] webmasters: Prof. John Doyle, [[Group|CDS group]], [http://www.cds.caltech.edu/contact/ Sysadmin at CDS]

or [http://netlab.caltech.edu/contact.php Hana & Lachlan at Netlab, CS]

or [http://www.cds.caltech.edu/contact/ contact CDS]

==Sysops topics==
*The source files for this wiki folder name: '''___''' are mounted onto '''file server:___''' and edited/hosted via '''web server:___''' at CDS, Caltech.
* This wiki URL is <http://www.cds.caltech.edu/~doyle2/wiki/>
* The common CSS definitions can be edited at MediaWiki:Common.css
* [[To Do]] page lists tasks and suggestions for maintaining and updating the wiki.
* Sidebar can be edited at [[MediaWiki:Sidebar]]. For instructions, see <http://www.mediawiki.org/wiki/Manual:Navigation_bar>.
* To change an Infobox template, create a page in the '''Template:''' namespace.
*Paste contents from small page onto a larger page by typing <nowiki> {{:small page name}} </nowiki> onto larger page
*Starting a new page labelled <nowiki>[[Private: ___]]</nowiki> denotes private page requiring restricted password
*More useful links for Sysops topics already listed in sections above.

===Linux commands===
*To view instructions on changing file permissions on Unix, type '''man chmod''' on the Linux command line. Then admin can choose which files are w= writable, R=readable etc by admin or group. If in doubt ask Lun or CDS sysadmin!
*ssh to website, then type in '''cd ..''' enter then '''ln -s hanas_site/filename.php''' creates symbolic link to Hana's Netlab website stored at CS, Caltech.
*For linux users, a short summary of usage can be obtained by typing
<command> --help
into the linux command line.

===Special pages===
*[[Special:Specialpages]] lists links to pages important to managing this wiki, for example,
**[[Special:Userlogin|to log-in/create account]]
**[[Special:Version|to check information about this mediawiki/MySQL/PHP behind this website]]
**[[Special:Recentchanges|to view/control recent changes]]

===Error messages===
* 404 Not Found is an error message when non-existent URL is typed into the browser, ie webpage not found
* 403 Access forbidden, ie when user is not allowed access to some pages

===Create account / Restricting User Level===
Accounts for this wiki have been given mostly to [[Group|Prof. Doyle's group]] and some [http://netlab.caltech.edu/people.php Netlab members].

Editing has been limited to users logged in existing user account and user levels have been restricted in some accounts.

See also section above '''Linux commands''', on ''changing file permissions''!

[[Special:Specialpages]] has pages important to managing user accounts, for example
*[[Special:Userlogin|to log-in/create account]]
**On this wiki, login as a ''Sysops'' user => [[Special:Specialpages|''Special pages'']] => [[Special:Userlogin|"Login/Create Account"]] => ''Create Account'', fill in the fields.
*[[Special:Blockip|block user]]

Useful instructions from <http://meta.wikimedia.org/wiki/> and <http://www.mediawiki.org/wiki/>:
*[http://meta.wikimedia.org/wiki/MediaWiki_FAQ#User_administration Administering user rights]
*[http://www.mediawiki.org/wiki/Manual:FAQ#How_do_I_administrate.2Fmanage_user_rights.3F Managing/administering/restricting user rights]
*[http://www.mediawiki.org/wiki/Manual:FAQ#How_do_I_reset_a_password.3F Reset password]
*[http://www.mediawiki.org/wiki/Manual:FAQ#How_do_I_remove_the_article.2Fedit_etc_tabs_for_users_who_are_not_logged_in.3F Removing tabs to users not logged in]

==Upload file==
===Upload limit===
*[http://www.mediawiki.org/wiki/Manual:Configuring_file_uploads#Set_maximum_size_for_file_uploads Know Media Wiki upload limit 2MB]

===More upload tips===
*Upload file onto this wiki by click on "Upload file" option in Toolbox on the [[MediaWiki:Sidebar]]
* Once the file has been uploaded, remember to acknowledge the '''source''' or '''bibliography''' details on the upload page, and ensure it does not violate copyright and related issues!
*pdf, ppt, jpg are formats can now be uploaded to this wiki, after implementing relevant code in LocalSettings.php

==Images==
===Thumbnails===
To install software to create thumbnails on this mwiki,

* follow instructions on [http://meta.wikimedia.org/wiki/MediaWiki_FAQ#How_do_I_install_Imagemagick_for_Thumbnails_on_Windows_-_MAR_2006_.3F MediaWiki:Help for creating thumbnails]
* edit code in file below, as instructed
...\mwiki\localsettings.php
* ensure the ImageMagick version that you choose to download is compatible with [[Special:Version|this wiki version]] listed above
* create folder "ImageMagick" on CDS server IP: ??? C:\program files
* onto this ImageMagick folder, download [http://www.imagemagick.org/download/www/binary-releases.html ImageMagick]

===Add Images===
...\mwiki\localsettings.php
was edited to enable '''file uploading''' from the Toolbox on the Sidebar.
*Upload image as instructed in section '''more upload tips''' above.
* [http://www.mediawiki.org/wiki/Help:Images MediaWiki:Help Adding images]

===Find images in wiki===
To lists all the image files (jpg, pdf, etc) on this wiki, click on [[Special:Specialpages|Special pages]] on sidebar, then select [[Special:Allpages|All pages]], then on this page select '''image''' in the '''Namespace''' box (pull down menu), and lastly select '''Go'''.

==Navigation==
===Creating a redirect===
Re-directs are useful for searching for specific page by various keywords or other alternative names.

To create a redirect, you must start a new page with the name you want to direct from. Do this by typing the desired name into the search box, or straight into the URL (methods described on Help:Starting a new page)

For the text of the new page, enter the following:

#REDIRECT <nowiki>[[pagename]]</nowiki>

where pagename is the name of the page you want to redirect users to.


You can use the 'preview' button, to check that you have entered the correct page name (Generally you will be redirecting to an existing page name, so the link should be blue, not red)

* Redirect page to another page: On "Old wiki page" type in #REDIRECT <nowiki>[[New page link ]]</nowiki>

===Categories===
*<nowiki>[[Category:___]]</nowiki> files page under new or old category, very useful for grouping pages by category!
===Side bar===
[[Special:Categories]], [[Special:All articles]], '''Wiki help''' was added to side bar to list all pages by category and by article - quicker for user to find specific pages.

==Other features that could be added to wiki==
===Case Sensitivity===
To make page titles and usernames case-sensitive, added ''$wgCapitalLinks = false;'' to Local settings.php

===Social networking bookmarks===
http://www.mediawiki.org/wiki/Extension:ShareThis for downloads and adding social networking bookmarks like <http://digg.com/> and <http://www.reddit.com/>

==John Doyle's other homepages==
*<http://www.cds.caltech.edu/~doyle/>
*<http://www.cds.caltech.edu/~doyle/home.htm>

Main Page

2008-06-06T17:51:44Z

Lun: /* Research */

<table border=1 width=100% style="color:black; " cellpadding="20" cellspacing="0">
<tr>
<td align=center width=20%> [[Image:doyle.jpg]]</td>
<td width=60% align=center>
John C. Doyle 

John G Braun Professor 
of Control and Dynamical Systems 
Electrical Engineering 
and BioEngineering 
Division of Engineering and Applied Science 
California Institute of Technology 

</td>
<td align=center width=20%>


[[J. Doyle’s Bio]]

[[News]]

[[Calendar]]

[[#Contact|Contact]]

[https://www.cds.caltech.edu/squirrelmail/src/login.php CDS Webmail]
</td>
</tr></table>
{| align=center
|[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]
|}
<hr>

==Papers==
*[http://discovermagazine.com/2007/nov/this-man-wants-to-control-the-internet Discover magazine] interviews Prof. Doyle.

"This man wants to control the internet" by Carl Zimmer, Discover magazine, 10/25/2007.
*favourite papers
*[[Papers|More Papers]]

== Research ==
John Doyle's [[research]] interests are in theoretical foundations for complex networks in engineering and biology, as well as multiscale physics, and include integrating modeling, ID, analysis and design of uncertain nonlinear systems, and computation in analysis and simulation, including complexity theory to guide algorithm development. Applications interests are motivated by the interplay between: control, dynamical systems, and design and analysis of large, complex systems.

*[http://www.cds.caltech.edu/~dennice/fluids/index.php?title=Main_Page Fluids]
*[http://openwetware.org/wiki/Doyle Physiology]
*[[Systems Verification]]

== Contact ==
{| width=100%
|- valign=top
| width=50% |

'''Mailing Address'''

John Doyle 
California Institute of Technology 
Control and Dynamical Systems, MC 107-81 
1200 E. California Blvd 
Pasadena, CA 91125 USA
| width=50% |

'''Contact information'''

E-mail: doyle AT cds dot caltech dot edu 
Office: 109 Steele, 
Phone: 626.395.4808 Fax: 626.395.6170 
Assitant: Gloria Bain, 626.395.4140 
Labs: 12 STL, 110 GUG (x2319)
|-
|

===Other links===

*[http://www.caltech.edu California Institute of Technology]
**[http://www.eas.caltech.edu Engineering and Applied Science Division]
***[http://www.be.caltech.edu/ Bioengineering Department]
***[http://www.cds.caltech.edu Control and Dynamical Systems Department]
***[http://www.ee2.caltech.edu/ Electrical Engineering Department]
|}

Main Page

2008-05-23T22:48:27Z

Lun: /* Contact */

<table border=1 width=100% style="color:black; " cellpadding="20" cellspacing="0">
<tr>
<td align=center width=20%> [[Image:doyle.jpg]]</td>
<td width=60% align=center>
John C. Doyle 

John G Braun Professor 
of Control and Dynamical Systems 
Electrical Engineering 
and BioEngineering 
Division of Engineering and Applied Science 
California Institute of Technology 

</td>
<td align=center width=20%>


[[J. Doyle’s Bio]]

[[News]]

[[Calendar]]

[[#Contact|Contact]]

[https://www.cds.caltech.edu/squirrelmail/src/login.php CDS Webmail]
</td>
</tr></table>
{| align=center
|[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]
|}
<hr>

==Papers==
*[http://discovermagazine.com/2007/nov/this-man-wants-to-control-the-internet Discover magazine] interviews Prof. Doyle.

"This man wants to control the internet" by Carl Zimmer, Discover magazine, 10/25/2007.
*favourite papers
*[[Papers|More Papers]]

== Research ==
John Doyle's [[research]] interests are in theoretical foundations for complex networks in engineering and biology, as well as multiscale physics, and include integrating modeling, ID, analysis and design of uncertain nonlinear systems, and computation in analysis and simulation, including complexity theory to guide algorithm development. Applications interests are motivated by the interplay between: control, dynamical systems, and design and analysis of large, complex systems.

*[http://openwetware.org/wiki/Doyle Physiology]
*[[Systems Verification]]

== Contact ==
{| width=100%
|- valign=top
| width=50% |

'''Mailing Address'''

John Doyle 
California Institute of Technology 
Control and Dynamical Systems, MC 107-81 
1200 E. California Blvd 
Pasadena, CA 91125 USA
| width=50% |

'''Contact information'''

E-mail: doyle AT cds dot caltech dot edu 
Office: 109 Steele, 
Phone: 626.395.4808 Fax: 626.395.6170 
Assitant: Gloria Bain, 626.395.4140 
Labs: 12 STL, 110 GUG (x2319)
|-
|

===Other links===

*[http://www.caltech.edu California Institute of Technology]
**[http://www.eas.caltech.edu Engineering and Applied Science Division]
***[http://www.be.caltech.edu/ Bioengineering Department]
***[http://www.cds.caltech.edu Control and Dynamical Systems Department]
***[http://www.ee2.caltech.edu/ Electrical Engineering Department]
|}

Main Page

2008-05-23T22:46:33Z

Lun: /* Contact */

<table border=1 width=100% style="color:black; " cellpadding="20" cellspacing="0">
<tr>
<td align=center width=20%> [[Image:doyle.jpg]]</td>
<td width=60% align=center>
John C. Doyle 

John G Braun Professor 
of Control and Dynamical Systems 
Electrical Engineering 
and BioEngineering 
Division of Engineering and Applied Science 
California Institute of Technology 

</td>
<td align=center width=20%>


[[J. Doyle’s Bio]]

[[News]]

[[Calendar]]

[[#Contact|Contact]]

[https://www.cds.caltech.edu/squirrelmail/src/login.php CDS Webmail]
</td>
</tr></table>
{| align=center
|[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]
|}
<hr>

==Papers==
*[http://discovermagazine.com/2007/nov/this-man-wants-to-control-the-internet Discover magazine] interviews Prof. Doyle.

"This man wants to control the internet" by Carl Zimmer, Discover magazine, 10/25/2007.
*favourite papers
*[[Papers|More Papers]]

== Research ==
John Doyle's [[research]] interests are in theoretical foundations for complex networks in engineering and biology, as well as multiscale physics, and include integrating modeling, ID, analysis and design of uncertain nonlinear systems, and computation in analysis and simulation, including complexity theory to guide algorithm development. Applications interests are motivated by the interplay between: control, dynamical systems, and design and analysis of large, complex systems.

*[http://openwetware.org/wiki/Doyle Physiology]
*[[Systems Verification]]

== Contact ==
{| width=100%
|- valign=top
| width=50% |

'''Mailing Address'''

John Doyle 
California Institute of Technology 
Control and Dynamical Systems, MC 107-81 
1200 E. California Blvd 
Pasadena, CA 91125 USA
| width=50% |

'''Contact information'''

E-mail: doyle AT cds dot caltech dot edu
Office: 109 Steele, 
Phone: 626.395.4808 Fax: 626.395.6170 
Asst: Gloria Bain, x4140 
Labs: 12 STL, 110 GUG (x2319)
|-
|

===Other links===

*[http://www.caltech.edu California Institute of Technology]
**[http://www.eas.caltech.edu Engineering and Applied Science Division]
***[http://www.be.caltech.edu/ Bioengineering Department]
***[http://www.cds.caltech.edu Control and Dynamical Systems Department]
***[http://www.ee2.caltech.edu/ Electrical Engineering Department]
|}

Main Page

2008-05-23T22:36:29Z

Lun: /* Research */

<table border=1 width=100% style="color:black; " cellpadding="20" cellspacing="0">
<tr>
<td align=center width=20%> [[Image:doyle.jpg]]</td>
<td width=60% align=center>
John C. Doyle 

John G Braun Professor 
of Control and Dynamical Systems 
Electrical Engineering 
and BioEngineering 
Division of Engineering and Applied Science 
California Institute of Technology 

</td>
<td align=center width=20%>


[[J. Doyle’s Bio]]

[[News]]

[[Calendar]]

[[#Contact|Contact]]

[https://www.cds.caltech.edu/squirrelmail/src/login.php CDS Webmail]
</td>
</tr></table>
{| align=center
|[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]
|}
<hr>

==Papers==
*[http://discovermagazine.com/2007/nov/this-man-wants-to-control-the-internet Discover magazine] interviews Prof. Doyle.

"This man wants to control the internet" by Carl Zimmer, Discover magazine, 10/25/2007.
*favourite papers
*[[Papers|More Papers]]

== Research ==
John Doyle's [[research]] interests are in theoretical foundations for complex networks in engineering and biology, as well as multiscale physics, and include integrating modeling, ID, analysis and design of uncertain nonlinear systems, and computation in analysis and simulation, including complexity theory to guide algorithm development. Applications interests are motivated by the interplay between: control, dynamical systems, and design and analysis of large, complex systems.

*[http://openwetware.org/wiki/Doyle Physiology]
*[[Systems Verification]]

== Contact ==
{| width=100%
|- valign=top
| width=50% |

'''Mailing Address'''

John Doyle 
California Institute of Technology 
Control and Dynamical Systems, MC 107-81 
1200 E. California Blvd 
Pasadena, CA 91125 USA
| width=50% |

'''Contact information'''

E-mail: 
Office: 109 Steele, 
Phone: 626.395.4808 Fax: 626.395.6170 
Asst: Gloria Bain, x4140 
Labs: 12 STL, 110 GUG (x2319)
|-
|

===Other links===

*[http://www.caltech.edu California Institute of Technology]
**[http://www.eas.caltech.edu Engineering and Applied Science Division]
***[http://www.be.caltech.edu/ Bioengineering Department]
***[http://www.cds.caltech.edu Control and Dynamical Systems Department]
***[http://www.ee2.caltech.edu/ Electrical Engineering Department]
|}

Group

2008-05-21T18:17:24Z

Lun: /* Alumni */

John Doyle's research group is part of [http://www.cds.caltech.edu/people/ CDS department] at Caltech.

==Current Group==
{| width=100% border=0 cellpadding=0 cellspacing=0
|-
|'''Faculty'''
|'''Postdocs
|'''Students'''
|-
|John Doyle
|[http://www.cds.caltech.edu/people/portal/?id=662 Aaron D. Ames]

[http://www.cds.caltech.edu/~chen/ Lijun Chen]

[http://www.ist.caltech.edu/~brecht/ Ben Recht]

[http://www.cds.caltech.edu/~dtarraf/ Danielle C.Tarraf]

|''Graduate students''
[http://www.cds.caltech.edu/people/portal/?id=4 Aristotelis Asimakopoulos]

[http://www.cds.caltech.edu/people/portal/?id=384 Gentian Buzi]

[http://www.cds.caltech.edu/people/portal/?id=758 Vanessa Carson]

[http://www.cds.caltech.edu/people/portal/?id=760 Fiona Chandra]

[http://www.cds.caltech.edu/people/portal/?id=331 Dennice Maynard Gayme]

[http://www.cds.caltech.edu/~andyl/ Andrew Lamperski]

[http://www.cds.caltech.edu/~lavaei/ Javad Lavaei-Yanesi]

[http://www.cds.caltech.edu/people/portal/?id=753 Na Li]

[http://www.cds.caltech.edu/people/portal/?id=522 Marcos Nahmad Bensusan]

|-
|'''Admin staff'''
|'''Visitors'''
|''Undergraduate students''
|-
|[http://www.cds.caltech.edu/people/portal/?id=469 Gloria Bain]
|[http://www.cds.caltech.edu/~lun/ Lun Li]
|

|}

==Past Group==
===Alumni===
{| width=100% border=0 cellpadding=0 cellspacing=0
|-
|'''2007'''
|'''2000-2006'''

|'''1990-1999'''
|-
|[http://www.cds.caltech.edu/~chen/ Lijun Chen]

[http://www.cds.caltech.edu/~lun Lun Li]

[http://www.cds.caltech.edu/people/portal/?id=6 Xin Liu]

[http://www.cds.caltech.edu/~alfredo/ Alfredo Martinez]

[http://www.cds.caltech.edu/people/portal/?id=184 Oluwatosin Otitoju]

|

[http://faculty.nps.edu/dlalders/ David Alderson]

Nizar Batada

[http://www.cds.caltech.edu/~xlfeng/ Xiaolin Feng]

Irene Gregory

[http://www.seas.upenn.edu/~jadbabai/ Ali Jadbabaie]

[http://webfiles.uci.edu/yjing/www/ Yindi Jing]

Sven Khatri

[http://users.ox.ac.uk/~engs0587/ Antonis Papachristodoulou]

[http://www.mit.edu/~parrilo/ Pablo Parrilo]

[http://www.cds.caltech.edu/~prajna/ Stephen Prajna]

[http://www.cds.caltech.edu/~jiantao/ Jiantao Wang]

[http://www.cds.caltech.edu/~jyu/ Jie Yu]

[http://www.cds.caltech.edu/~xyzhu/ Xiaoyun Zhu]

|Carolyn Beck

Raff D'Andrea

Sonja Glavaski

Irene Gregory

Yun Huang

Michael Kantner

[http://www.ee.ucla.edu/~paganini/ Fernando Paganini]

[http://www.stanford.edu/dept/MSandE/people/faculty/primbs/index.html James Primbs]

Stefano Soatto

Jorge Tierno

|}

===Past Postdocs===
{| width=100% border=0 cellpadding=0 cellspacing=0
|-
|'''2007'''

[http://www.cds.caltech.edu/~maryam/ Maryam Fazel, Research scientist]

|'''2000-2006
Masahiro Yanagisawa

[http://www-control.eng.cam.ac.uk/~jmg77/ Jorge Goncalves]

[http://devcell.bio.uci.edu/faculty/yi.htm Tau-Mu Yi]

|'''1990-1999'''
|-
|?
|[http://www.nps.navy.mil/orfacpag/resumePages/alderson.htm David Alderson]

[http://www.bmc.riken.jp/~reiko/index.htm Reiko Tanaka]

|?
|}

===Past Visitors===
{| width=100% border=0 cellpadding=0 cellspacing=0
|-
|'''2007'''
|'''2000-2006
|'''1990-1999'''
|-
|Panagiota Stratou
|?
|?
|}

==MURF and SURF==
{| border="1"
|2007 ||2000-2006
|-
|[http://www.cds.caltech.edu/people/portal/?id=722 Chinwendu Enyioha]||
|-
| ||
|}

==Other collaborators==
{|
|-
|[[Image:3profs07.jpg|200px]]||[[Image:JCDgraph.jpg]]
|-
|2007 Commencement: Prof.'s John Doyle, Richard Murray & Steven Low. ||
Some collaborators at John Doyle's 50th birthday Connections Workshop, 2004:
|-
|[http://www.cds.caltech.edu/~murray/wiki/Image:John-and-marie.jpg John Doyle & Marie Csete from Murray's Wiki] Ask permission to download?|| ?
|}

*[http://userwww.service.emory.edu/~mcsete/ Marie Csete, Lab] at [http://www.emory.edu/change_mode.cfm?mode=text Emory University], Atlanta.
**[http://www.emory.edu/PROVOST/greatscholars/MarieCsete.htm About Marie Csete's work.]

Group

2008-05-21T18:12:53Z

Lun: /* Current Group */

John Doyle's research group is part of [http://www.cds.caltech.edu/people/ CDS department] at Caltech.

==Current Group==
{| width=100% border=0 cellpadding=0 cellspacing=0
|-
|'''Faculty'''
|'''Postdocs
|'''Students'''
|-
|John Doyle
|[http://www.cds.caltech.edu/people/portal/?id=662 Aaron D. Ames]

[http://www.cds.caltech.edu/~chen/ Lijun Chen]

[http://www.ist.caltech.edu/~brecht/ Ben Recht]

[http://www.cds.caltech.edu/~dtarraf/ Danielle C.Tarraf]

|''Graduate students''
[http://www.cds.caltech.edu/people/portal/?id=4 Aristotelis Asimakopoulos]

[http://www.cds.caltech.edu/people/portal/?id=384 Gentian Buzi]

[http://www.cds.caltech.edu/people/portal/?id=758 Vanessa Carson]

[http://www.cds.caltech.edu/people/portal/?id=760 Fiona Chandra]

[http://www.cds.caltech.edu/people/portal/?id=331 Dennice Maynard Gayme]

[http://www.cds.caltech.edu/~andyl/ Andrew Lamperski]

[http://www.cds.caltech.edu/~lavaei/ Javad Lavaei-Yanesi]

[http://www.cds.caltech.edu/people/portal/?id=753 Na Li]

[http://www.cds.caltech.edu/people/portal/?id=522 Marcos Nahmad Bensusan]

|-
|'''Admin staff'''
|'''Visitors'''
|''Undergraduate students''
|-
|[http://www.cds.caltech.edu/people/portal/?id=469 Gloria Bain]
|[http://www.cds.caltech.edu/~lun/ Lun Li]
|

|}

==Past Group==
===Alumni===
{| width=100% border=0 cellpadding=0 cellspacing=0
|-
|'''2007'''
|'''2000-2006'''

|'''1990-1999'''
|-
|[http://www.cds.caltech.edu/~chen/ Lijun Chen]

[http://www.cds.caltech.edu/~lun Lun Li]

[http://www.cds.caltech.edu/people/portal/?id=6 Xin Liu]

[http://www.cds.caltech.edu/~alfredo/ Alfredo Martinez]

[http://www.cds.caltech.edu/people/portal/?id=184 Oluwatosin Otitoju]

|

Nizar Batada

[http://www.cds.caltech.edu/~xlfeng/ Xiaolin Feng]

Irene Gregory

[http://www.seas.upenn.edu/~jadbabai/ Ali Jadbabaie]

[http://www.cds.caltech.edu/people/portal/?id=40 Yindi Jing]

Sven Khatri

[http://users.ox.ac.uk/~engs0587/ Antonis Papachristodoulou]

[http://www.mit.edu/~parrilo/ Pablo Parrilo]

[http://www.cds.caltech.edu/~prajna/ Stephen Prajna]

[http://www.cds.caltech.edu/~jiantao/ Jiantao Wang]

[http://www.cds.caltech.edu/~jyu/ Jie Yu]

[http://www.cds.caltech.edu/~xyzhu/ Xiaoyun Zhu]

|Carolyn Beck

Raff D'Andrea

Sonja Glavaski

Irene Gregory

Yun Huang

Michael Kantner

[http://www.ee.ucla.edu/~paganini/ Fernando Paganini]

[http://www.stanford.edu/dept/MSandE/people/faculty/primbs/index.html James Primbs]

Stefano Soatto

Jorge Tierno

|}

===Past Postdocs===
{| width=100% border=0 cellpadding=0 cellspacing=0
|-
|'''2007'''

[http://www.cds.caltech.edu/~maryam/ Maryam Fazel, Research scientist]

|'''2000-2006
Masahiro Yanagisawa

[http://www-control.eng.cam.ac.uk/~jmg77/ Jorge Goncalves]

[http://devcell.bio.uci.edu/faculty/yi.htm Tau-Mu Yi]

|'''1990-1999'''
|-
|?
|[http://www.nps.navy.mil/orfacpag/resumePages/alderson.htm David Alderson]

[http://www.bmc.riken.jp/~reiko/index.htm Reiko Tanaka]

|?
|}

===Past Visitors===
{| width=100% border=0 cellpadding=0 cellspacing=0
|-
|'''2007'''
|'''2000-2006
|'''1990-1999'''
|-
|Panagiota Stratou
|?
|?
|}

==MURF and SURF==
{| border="1"
|2007 ||2000-2006
|-
|[http://www.cds.caltech.edu/people/portal/?id=722 Chinwendu Enyioha]||
|-
| ||
|}

==Other collaborators==
{|
|-
|[[Image:3profs07.jpg|200px]]||[[Image:JCDgraph.jpg]]
|-
|2007 Commencement: Prof.'s John Doyle, Richard Murray & Steven Low. ||
Some collaborators at John Doyle's 50th birthday Connections Workshop, 2004:
|-
|[http://www.cds.caltech.edu/~murray/wiki/Image:John-and-marie.jpg John Doyle & Marie Csete from Murray's Wiki] Ask permission to download?|| ?
|}

*[http://userwww.service.emory.edu/~mcsete/ Marie Csete, Lab] at [http://www.emory.edu/change_mode.cfm?mode=text Emory University], Atlanta.
**[http://www.emory.edu/PROVOST/greatscholars/MarieCsete.htm About Marie Csete's work.]

Group

2008-05-21T18:11:26Z

Lun: /* Current Group */

John Doyle's research group is part of [http://www.cds.caltech.edu/people/ CDS department] at Caltech.

==Current Group==
{| width=100% border=0 cellpadding=0 cellspacing=0
|-
|'''Faculty'''
|'''Postdocs
|'''Students'''
|-
|John Doyle
|[http://www.cds.caltech.edu/people/portal/?id=662 Aaron D. Ames]

[http://www.cds.caltech.edu/~chen/ Lijun Chen]

Ben Recht

[http://www.cds.caltech.edu/~dtarraf/ Danielle C.Tarraf]

|''Graduate students''
[http://www.cds.caltech.edu/people/portal/?id=4 Aristotelis Asimakopoulos]

[http://www.cds.caltech.edu/people/portal/?id=384 Gentian Buzi]

[http://www.cds.caltech.edu/people/portal/?id=758 Vanessa Carson]

[http://www.cds.caltech.edu/people/portal/?id=760 Fiona Chandra]

[http://www.cds.caltech.edu/people/portal/?id=331 Dennice Maynard Gayme]

[http://www.cds.caltech.edu/~andyl/ Andrew Lamperski]

[http://www.cds.caltech.edu/~lavaei/ Javad Lavaei-Yanesi]

[http://www.cds.caltech.edu/people/portal/?id=753 Na Li]

[http://www.cds.caltech.edu/people/portal/?id=522 Marcos Nahmad Bensusan]

|-
|'''Admin staff'''
|'''Visitors'''
|''Undergraduate students''
|-
|[http://www.cds.caltech.edu/people/portal/?id=469 Gloria Bain]
|[http://www.cds.caltech.edu/people/portal/?id=713 Rutika Muchhala (student)]

[http://www.cds.caltech.edu/~lun/ Lun Li]
|

|}

==Past Group==
===Alumni===
{| width=100% border=0 cellpadding=0 cellspacing=0
|-
|'''2007'''
|'''2000-2006'''

|'''1990-1999'''
|-
|[http://www.cds.caltech.edu/~chen/ Lijun Chen]

[http://www.cds.caltech.edu/~lun Lun Li]

[http://www.cds.caltech.edu/people/portal/?id=6 Xin Liu]

[http://www.cds.caltech.edu/~alfredo/ Alfredo Martinez]

[http://www.cds.caltech.edu/people/portal/?id=184 Oluwatosin Otitoju]

|

Nizar Batada

[http://www.cds.caltech.edu/~xlfeng/ Xiaolin Feng]

Irene Gregory

[http://www.seas.upenn.edu/~jadbabai/ Ali Jadbabaie]

[http://www.cds.caltech.edu/people/portal/?id=40 Yindi Jing]

Sven Khatri

[http://users.ox.ac.uk/~engs0587/ Antonis Papachristodoulou]

[http://www.mit.edu/~parrilo/ Pablo Parrilo]

[http://www.cds.caltech.edu/~prajna/ Stephen Prajna]

[http://www.cds.caltech.edu/~jiantao/ Jiantao Wang]

[http://www.cds.caltech.edu/~jyu/ Jie Yu]

[http://www.cds.caltech.edu/~xyzhu/ Xiaoyun Zhu]

|Carolyn Beck

Raff D'Andrea

Sonja Glavaski

Irene Gregory

Yun Huang

Michael Kantner

[http://www.ee.ucla.edu/~paganini/ Fernando Paganini]

[http://www.stanford.edu/dept/MSandE/people/faculty/primbs/index.html James Primbs]

Stefano Soatto

Jorge Tierno

|}

===Past Postdocs===
{| width=100% border=0 cellpadding=0 cellspacing=0
|-
|'''2007'''

[http://www.cds.caltech.edu/~maryam/ Maryam Fazel, Research scientist]

|'''2000-2006
Masahiro Yanagisawa

[http://www-control.eng.cam.ac.uk/~jmg77/ Jorge Goncalves]

[http://devcell.bio.uci.edu/faculty/yi.htm Tau-Mu Yi]

|'''1990-1999'''
|-
|?
|[http://www.nps.navy.mil/orfacpag/resumePages/alderson.htm David Alderson]

[http://www.bmc.riken.jp/~reiko/index.htm Reiko Tanaka]

|?
|}

===Past Visitors===
{| width=100% border=0 cellpadding=0 cellspacing=0
|-
|'''2007'''
|'''2000-2006
|'''1990-1999'''
|-
|Panagiota Stratou
|?
|?
|}

==MURF and SURF==
{| border="1"
|2007 ||2000-2006
|-
|[http://www.cds.caltech.edu/people/portal/?id=722 Chinwendu Enyioha]||
|-
| ||
|}

==Other collaborators==
{|
|-
|[[Image:3profs07.jpg|200px]]||[[Image:JCDgraph.jpg]]
|-
|2007 Commencement: Prof.'s John Doyle, Richard Murray & Steven Low. ||
Some collaborators at John Doyle's 50th birthday Connections Workshop, 2004:
|-
|[http://www.cds.caltech.edu/~murray/wiki/Image:John-and-marie.jpg John Doyle & Marie Csete from Murray's Wiki] Ask permission to download?|| ?
|}

*[http://userwww.service.emory.edu/~mcsete/ Marie Csete, Lab] at [http://www.emory.edu/change_mode.cfm?mode=text Emory University], Atlanta.
**[http://www.emory.edu/PROVOST/greatscholars/MarieCsete.htm About Marie Csete's work.]