2017-09-26T04:06:28Z

Doyle: /* Contact */

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John C. Doyle 道耀 

Jean-Lou Chameau Professor 
of Control and Dynamical Systems 
Electrical Engineering 
and BioEngineering 
Division of Engineering and Applied Science 
California Institute of Technology 

</td>
<td align=center width=20%>


[[#Contact|Contact]]

</td>
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{| align=center
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<hr>
==Fall 2017 CDS 231 New Control Course==

'''For last spring's course: ''' See [[CDS 270 Course details (Spring 2017)]] for more

The aims of CDS 231 are similar to CDS 270 (Sp 2017) but with more emphasis on math details, and less on motivating case studies.

'''Aims''': Complex tech, bio, neuro, med, eco, and socio-econ networks have both strikingly universal shared architectural features and constraining "laws" but with extremely different domain specific details. The first half of the course will use familiar case studies to motivate a new mathematical framework for understanding these similarities and differences, emphasizing layering, dynamics, optimization, nonlinearity, learning, communications, and control, sparsity and structure, and tradeoffs between robustness, efficiency, and evolvability. Lectures will primarily be by video with class time devoted to discussions and lots of live demos and games involving audience participation. The second half of the term will be a fast review of core theory in robust and optimal control and a bit of nonlinear using SOSTOOLS.

To get started on the videos, and reading material, see the subfolder New_CDS231 in the dropbox folder:

[https://www.dropbox.com/sh/7bgwzqsl7ycxhie/AABQB9L2J-XmCniwgyO3N83Ba?dl=0 Dropbox folder]

See [[Course details]] for more details on 231 (nothing there yet).

==Brief Bio==

John Doyle is the Jean-Lou Chameau Professor of Control and Dynamical Systems, Electrical Engineer, and BioEngineering at Caltech, and received the BS&MS in EE, MIT (1977), and PhD in Math, UC Berkeley (1984)). He was a consultant at Honeywell Systems and Research Center from 1976 to 1990.

'''Research''' is on mathematical foundations for complex networks with applications in biology, technology, medicine, ecology, neuroscience, and multiscale physics that integrates theory from control, computation, communication, optimization, statistics (e.g. Machine Learning). An emphasis on universal laws and architectures, robustness/efficiency and speed/accuracy tradeoffs, adaptability, and evolvability and large scale systems with sparse, saturating, delayed, quantized, uncertain sensing, communications, computing, and actuation. Early work was on robustness of feedback control systems with applications to aerospace and process control. His students and research group developed software packages like the Matlab Robust Control Toolbox and the Systems Biology Markup Language (SBML).

'''Prizes, awards, records, championships''' include the 1990 IEEE Baker Prize (for all IEEE publications), also listed in the world top 10 “most important" papers in mathematics 1981-1993, IEEE Automatic Control Transactions Award (twice 1998, 1999), 1994 AACC American Control Conference Schuck Award, 2004 ACM Sigcomm Paper Prize and 2016 “test of time” award, and inclusion in Best Writing on Mathematics 2010. Individual awards include 1977 IEEE Power Hickernell, 1983 AACC Eckman, 1984 UC Berkeley Friedman, 1984 IEEE Centennial Outstanding Young Engineer (a one-time award for IEEE 100th anniversary), and 2004 IEEE Control Systems Field Award. Best known for fabulous friends, partner, colleagues, and students. Has held world and national records and championships in various sports, but is otherwise quite fragile.

[http://www.cds.caltech.edu/~doyle/wiki/images/a/ad/DoyleBibNIHstyle2016.pdf NIH Style Bio]

[http://www.cds.caltech.edu/~doyle/wiki/index.php?title=J._Doyle%27s_Bio_Athletics (Old) Athletics Bio]

==Somewhat Recent Application Papers==

For recent theory papers see [http://www.cds.caltech.edu/~nmatni Nikolai Matni]

For fairly complete list of references see [https://scholar.google.com/citations?user=C6DtGmMAAAAJ&hl=en Google Scholar]

'''Neuroscience and Machine Learning''' : [http://www.cds.caltech.edu/~doyle/wiki/images/6/62/NECO_a_00936.pdf Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings] Das, Sampson, Lainscsek, Muller, Lin, Doyle, Cash, Halgren, Sejnowski, ''Neural Computation'', 2017

'''Education and Neuroscience''': [http://www.cds.caltech.edu/~doyle/wiki/images/2/2f/CDCDoyleTutorial.pdf Tutorial on education] for Conference on Decision and Control, 2016

'''Medicine''': [http://www.cds.caltech.edu/~doyle/wiki/images/1/11/2014PNAS_HRV.PDF Robust efficiency and actuator saturation explain healthy heart rate control and variability]‎ Li, Cruz, Chien, Sojoudi, Recht, Stone, Csete, Bahmiller, Doyle (2014), ''P Natl Acad Sci USA'' 111 (33)

'''Medicine''': [http://www.cds.caltech.edu/~doyle/wiki/images/0/06/SepsisJCritCareNihms.pdf Sepsis: Something Old, Something New, and a Systems View] ''J Crit Care.'' (2012)

'''Universal architectures''': [http://www.cds.caltech.edu/~doyle/wiki/images/8/82/OnlineFinalPNASSackler2011.pdf Architecture, constraints, and behavior],
JC Doyle, MC Csete,
''P Natl Acad Sci USA'', vol. 108, Sup 3 15624-15630

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/7/71/CorrectedScienceGlycolyticOscOnlineFinal.pdf Gycolytic oscillations and limits on robust efficiency],
FA Chandra, G Buzi, JC Doyle
''Science'' 333(6039):187-192, July 2011

'''Turbulence''': [http://www.cds.caltech.edu/~doyle/wiki/images/8/87/PhysFluids_23_065108.pdf Amplification and nonlinear mechanisms in plane Couette flow.],
D Gayme, B McKeon, B Bamieh, A Papachristodolou, and J Doyle.
''Physics of Fluids'' v23:6:065108 (2011)

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/a/a2/6.AutomaticaJune2011.pdf Analysis of autocatalytic networks in biology],
G Buzi, U Topcu, J Doyle,
''Automatica'' 47:1123-1130 (2011)

'''Earthquakes''': [http://www.cds.caltech.edu/~doyle/wiki/images/a/a1/EarthquakesCalFaults.pdf The magnitude distribution of earthquakes near Southern California faults]
Page, Alderson, and Doyle
''JOURNAL OF GEOPHYSICAL RESEARCH'', VOL. 116, (2011)

'''Physics''': [http://www.cds.caltech.edu/~doyle/wiki/images/c/c4/2.IEEE_TransAutoCtrl_Feb_2011_.pdf On Lossless Approximations, the Fluctuation-Dissipation Theorem, and Limitations of Measurements],
H Sandberg, JC Delvenne, JC Doyle,
''IEEE Trans Auto Control'', v56:2, 293-308 (2011)

'''Wireless''': [http://www.cds.caltech.edu/~doyle/wiki/images/6/62/9.ComputerNetworksFeb2011.pdf Cross-layer design in multihop wireless networks],
L Chen, SH Low, and JC Doyle,
''Computer Networks'' 55:480–496 (2011)

'''Circuits''': [http://ieeexplore.ieee.org/document/5635369/?arnumber=5635369 Solving Large-Scale Hybrid Circuit-Antenna Problems] Lavaei, Babakhani, Hajimiri and Doyle, I''EEE Transactions on Circuits and Systems'' I, vol. 58, no. 2, pp. 374-387, Feb. 2011.

'''Complexity''': [http://www.cds.caltech.edu/~doyle/wiki/images/d/de/1.IEEE_TransSysMCyber_AldersonDoyle-July2010.pdf Contrasting Views of Complexity and Their Implications For Network-Centric Infrastructures]
Alderson and Doyle, ''IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS—PART A: SYSTEMS AND HUMANS'', VOL. 40, NO. 4, JULY 2010

'''Internet''': [http://www.cds.caltech.edu/~doyle/wiki/images/f/f8/AMSNoticesInternet.pdf Mathematics and the Internet: A Source of Enormous Confusion and Great Potential] Willinger, Alderson, and Doyle, ''Notices of the AMS'' Volume 56, Number 5 (2009)

'''Fire''': [http://www.cds.caltech.edu/~doyle/wiki/images/4/4a/ScienceFire.pdf Fire in the Earth System], ''Science'' 324, 481 (2009)

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/b/b7/Cell.pdf Robustness of Cellular Functions], Stelling, Sauer, Szallasi, Doyle, and Doyle, ''Cell'', 2004

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/0/05/ScienceOnlinePDF.pdf Reverse Engineering of Biological Complexity], Csete and Doyle, ''Science'', (2002)

*[[Papers|'''More Papers''']]

==News==

* [https://engineering.jhu.edu/gayme/people/ Dennice Gayme] (Hopkins) named Carol Linde Croft Faculty Scholar.

* [http://nali.seas.harvard.edu/ Na (Lina) Li] (Harvard) gets NSF CAREER and AFOSR YI awards.

* [http://ieor.berkeley.edu/~lavaei/Awards.html Javad Lavaei] (Berkeley) gets SIAM Control and Systems Theory Prize and AACC Eckman, and too many other awards to list.

*Old: [http://discovermagazine.com/2007/nov/this-man-wants-to-control-the-internet Discover magazine] "This man wants to control the internet" by Carl Zimmer, Discover magazine, 2008.

*Newer: [https://rigorandrelevance.wordpress.com/author/doyleatcaltech/ Blog and new videos] Follow link to dropbox folder with accessible introductory videos and case studies in neuroscience, cell biology, and medical physiology. Our you can go directly to the [https://www.dropbox.com/sh/7bgwzqsl7ycxhie/AABQB9L2J-XmCniwgyO3N83Ba?dl=0# dropbox folder] or see above video lists.

Please download the .mp4 files from the dropbox, otherwise they will run in preview mode, which limits the time.

== Not very recent talk slides ==

U Wisc Madison CS Sept 2012 [http://pages.cs.wisc.edu/~brecht/DoyleUWCSTooManySlides.pdf pdf]

UCSB Sage lectures, May 2012. (These are pdf files. Ask me for the ppt if you want to steal anything. I would be very flattered.)

[http://www.cds.caltech.edu/~doyle/wiki/images/7/76/1_DoyleSageLec1_May7_2012.pdf Lecture 1 May 7, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/1/16/2_DoyleSageLec2_May14_2012.pdf Lecture 2 May 14, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/8/8e/3_DoyleSageLec3_May21_2012.pdf Lecture 3 May 21, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/b/bd/4a_DoyleSageLec4_May30_2012.pdf Lecture 4a May 30, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/b/b7/4b_DoyleSageLec4_May30_2012.pdf Lecture 4b May 30, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/b/b3/UnivLawsArchs.pdf Summary: Universal laws and architectures (maybe start here)]

== Old Teaching Material ==

*[http://www.cds.caltech.edu/~doyle/wiki/images/a/a4/CDS212Lecture1.pdf CDS 212 Lecture 1 (2012)]

*[https://www.cds.caltech.edu/wiki/index.php/CDS_212_Fall_2011 CDS 212 (Fall 2011)]

*[http://www.cds.caltech.edu/~doyle/wiki/index.php?title=CDS213 CDS 213, Robust Control (Spring 2012)]
*[http://www.cds.caltech.edu/~murray/wiki/CDS_212_Fall_2010 CDS 212, Feedback Control Theory (Fall 2010)]
*[[CDS 213|The Architecture of Robust, Evolvable Networks (Wi10)]]

== Contact ==
{| width=100%
|- valign=top
| width=50% |

'''Mailing Address'''

John Doyle 
California Institute of Technology 
Control and Dynamical Systems, MC 107-81 
1200 E. California Blvd 
Pasadena, CA 91125 USA
| width=50% |

'''Contact information'''

E-mail: doyle AT caltech dot edu 
Office: 210 Annenberg, 
Phone: 626.395.4808 

'''Admin Assistant''': Monica Nolasco 
Office: 107 Steele, 
Email: mnolasco AT caltech dot edu 
Phone: 626.395.4140 
|-
|

===Other Caltech links===

*[http://www.caltech.edu California Institute of Technology]
**[http://www.eas.caltech.edu Engineering and Applied Science Division]
***[http://www.be.caltech.edu/ Bioengineering Department]
***[http://www.cds.caltech.edu Control and Dynamical Systems Department]
***[http://www.ee2.caltech.edu/ Electrical Engineering Department]
|}

Main Page

2017-09-26T04:01:51Z

Doyle: /* Videos and slides */

<table border=1 width=100% style="color:black; " cellpadding="20" cellspacing="0">
<tr>
<td align=center width=20%> [[Image:Smallpic.JPG]]</td>
<td width=60% align=center>
John C. Doyle 道耀 

Jean-Lou Chameau Professor 
of Control and Dynamical Systems 
Electrical Engineering 
and BioEngineering 
Division of Engineering and Applied Science 
California Institute of Technology 

</td>
<td align=center width=20%>


[[#Contact|Contact]]

</td>
</tr></table>
{| align=center
|[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]
|}
<hr>
==Fall 2017 CDS 231 New Control Course==

'''For last spring's course: ''' See [[CDS 270 Course details (Spring 2017)]] for more

The aims of CDS 231 are similar to CDS 270 (Sp 2017) but with more emphasis on math details, and less on motivating case studies.

'''Aims''': Complex tech, bio, neuro, med, eco, and socio-econ networks have both strikingly universal shared architectural features and constraining "laws" but with extremely different domain specific details. The first half of the course will use familiar case studies to motivate a new mathematical framework for understanding these similarities and differences, emphasizing layering, dynamics, optimization, nonlinearity, learning, communications, and control, sparsity and structure, and tradeoffs between robustness, efficiency, and evolvability. Lectures will primarily be by video with class time devoted to discussions and lots of live demos and games involving audience participation. The second half of the term will be a fast review of core theory in robust and optimal control and a bit of nonlinear using SOSTOOLS.

To get started on the videos, and reading material, see the subfolder New_CDS231 in the dropbox folder:

[https://www.dropbox.com/sh/7bgwzqsl7ycxhie/AABQB9L2J-XmCniwgyO3N83Ba?dl=0 Dropbox folder]

See [[Course details]] for more details on 231 (nothing there yet).

==Brief Bio==

John Doyle is the Jean-Lou Chameau Professor of Control and Dynamical Systems, Electrical Engineer, and BioEngineering at Caltech, and received the BS&MS in EE, MIT (1977), and PhD in Math, UC Berkeley (1984)). He was a consultant at Honeywell Systems and Research Center from 1976 to 1990.

'''Research''' is on mathematical foundations for complex networks with applications in biology, technology, medicine, ecology, neuroscience, and multiscale physics that integrates theory from control, computation, communication, optimization, statistics (e.g. Machine Learning). An emphasis on universal laws and architectures, robustness/efficiency and speed/accuracy tradeoffs, adaptability, and evolvability and large scale systems with sparse, saturating, delayed, quantized, uncertain sensing, communications, computing, and actuation. Early work was on robustness of feedback control systems with applications to aerospace and process control. His students and research group developed software packages like the Matlab Robust Control Toolbox and the Systems Biology Markup Language (SBML).

'''Prizes, awards, records, championships''' include the 1990 IEEE Baker Prize (for all IEEE publications), also listed in the world top 10 “most important" papers in mathematics 1981-1993, IEEE Automatic Control Transactions Award (twice 1998, 1999), 1994 AACC American Control Conference Schuck Award, 2004 ACM Sigcomm Paper Prize and 2016 “test of time” award, and inclusion in Best Writing on Mathematics 2010. Individual awards include 1977 IEEE Power Hickernell, 1983 AACC Eckman, 1984 UC Berkeley Friedman, 1984 IEEE Centennial Outstanding Young Engineer (a one-time award for IEEE 100th anniversary), and 2004 IEEE Control Systems Field Award. Best known for fabulous friends, partner, colleagues, and students. Has held world and national records and championships in various sports, but is otherwise quite fragile.

[http://www.cds.caltech.edu/~doyle/wiki/images/a/ad/DoyleBibNIHstyle2016.pdf NIH Style Bio]

[http://www.cds.caltech.edu/~doyle/wiki/index.php?title=J._Doyle%27s_Bio_Athletics (Old) Athletics Bio]

==Somewhat Recent Application Papers==

For recent theory papers see [http://www.cds.caltech.edu/~nmatni Nikolai Matni]

For fairly complete list of references see [https://scholar.google.com/citations?user=C6DtGmMAAAAJ&hl=en Google Scholar]

'''Neuroscience and Machine Learning''' : [http://www.cds.caltech.edu/~doyle/wiki/images/6/62/NECO_a_00936.pdf Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings] Das, Sampson, Lainscsek, Muller, Lin, Doyle, Cash, Halgren, Sejnowski, ''Neural Computation'', 2017

'''Education and Neuroscience''': [http://www.cds.caltech.edu/~doyle/wiki/images/2/2f/CDCDoyleTutorial.pdf Tutorial on education] for Conference on Decision and Control, 2016

'''Medicine''': [http://www.cds.caltech.edu/~doyle/wiki/images/1/11/2014PNAS_HRV.PDF Robust efficiency and actuator saturation explain healthy heart rate control and variability]‎ Li, Cruz, Chien, Sojoudi, Recht, Stone, Csete, Bahmiller, Doyle (2014), ''P Natl Acad Sci USA'' 111 (33)

'''Medicine''': [http://www.cds.caltech.edu/~doyle/wiki/images/0/06/SepsisJCritCareNihms.pdf Sepsis: Something Old, Something New, and a Systems View] ''J Crit Care.'' (2012)

'''Universal architectures''': [http://www.cds.caltech.edu/~doyle/wiki/images/8/82/OnlineFinalPNASSackler2011.pdf Architecture, constraints, and behavior],
JC Doyle, MC Csete,
''P Natl Acad Sci USA'', vol. 108, Sup 3 15624-15630

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/7/71/CorrectedScienceGlycolyticOscOnlineFinal.pdf Gycolytic oscillations and limits on robust efficiency],
FA Chandra, G Buzi, JC Doyle
''Science'' 333(6039):187-192, July 2011

'''Turbulence''': [http://www.cds.caltech.edu/~doyle/wiki/images/8/87/PhysFluids_23_065108.pdf Amplification and nonlinear mechanisms in plane Couette flow.],
D Gayme, B McKeon, B Bamieh, A Papachristodolou, and J Doyle.
''Physics of Fluids'' v23:6:065108 (2011)

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/a/a2/6.AutomaticaJune2011.pdf Analysis of autocatalytic networks in biology],
G Buzi, U Topcu, J Doyle,
''Automatica'' 47:1123-1130 (2011)

'''Earthquakes''': [http://www.cds.caltech.edu/~doyle/wiki/images/a/a1/EarthquakesCalFaults.pdf The magnitude distribution of earthquakes near Southern California faults]
Page, Alderson, and Doyle
''JOURNAL OF GEOPHYSICAL RESEARCH'', VOL. 116, (2011)

'''Physics''': [http://www.cds.caltech.edu/~doyle/wiki/images/c/c4/2.IEEE_TransAutoCtrl_Feb_2011_.pdf On Lossless Approximations, the Fluctuation-Dissipation Theorem, and Limitations of Measurements],
H Sandberg, JC Delvenne, JC Doyle,
''IEEE Trans Auto Control'', v56:2, 293-308 (2011)

'''Wireless''': [http://www.cds.caltech.edu/~doyle/wiki/images/6/62/9.ComputerNetworksFeb2011.pdf Cross-layer design in multihop wireless networks],
L Chen, SH Low, and JC Doyle,
''Computer Networks'' 55:480–496 (2011)

'''Circuits''': [http://ieeexplore.ieee.org/document/5635369/?arnumber=5635369 Solving Large-Scale Hybrid Circuit-Antenna Problems] Lavaei, Babakhani, Hajimiri and Doyle, I''EEE Transactions on Circuits and Systems'' I, vol. 58, no. 2, pp. 374-387, Feb. 2011.

'''Complexity''': [http://www.cds.caltech.edu/~doyle/wiki/images/d/de/1.IEEE_TransSysMCyber_AldersonDoyle-July2010.pdf Contrasting Views of Complexity and Their Implications For Network-Centric Infrastructures]
Alderson and Doyle, ''IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS—PART A: SYSTEMS AND HUMANS'', VOL. 40, NO. 4, JULY 2010

'''Internet''': [http://www.cds.caltech.edu/~doyle/wiki/images/f/f8/AMSNoticesInternet.pdf Mathematics and the Internet: A Source of Enormous Confusion and Great Potential] Willinger, Alderson, and Doyle, ''Notices of the AMS'' Volume 56, Number 5 (2009)

'''Fire''': [http://www.cds.caltech.edu/~doyle/wiki/images/4/4a/ScienceFire.pdf Fire in the Earth System], ''Science'' 324, 481 (2009)

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/b/b7/Cell.pdf Robustness of Cellular Functions], Stelling, Sauer, Szallasi, Doyle, and Doyle, ''Cell'', 2004

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/0/05/ScienceOnlinePDF.pdf Reverse Engineering of Biological Complexity], Csete and Doyle, ''Science'', (2002)

*[[Papers|'''More Papers''']]

==News==

* [https://engineering.jhu.edu/gayme/people/ Dennice Gayme] (Hopkins) named Carol Linde Croft Faculty Scholar.

* [http://nali.seas.harvard.edu/ Na (Lina) Li] (Harvard) gets NSF CAREER and AFOSR YI awards.

* [http://ieor.berkeley.edu/~lavaei/Awards.html Javad Lavaei] (Berkeley) gets SIAM Control and Systems Theory Prize and AACC Eckman, and too many other awards to list.

*Old: [http://discovermagazine.com/2007/nov/this-man-wants-to-control-the-internet Discover magazine] "This man wants to control the internet" by Carl Zimmer, Discover magazine, 2008.

*Newer: [https://rigorandrelevance.wordpress.com/author/doyleatcaltech/ Blog and new videos] Follow link to dropbox folder with accessible introductory videos and case studies in neuroscience, cell biology, and medical physiology. Our you can go directly to the [https://www.dropbox.com/sh/7bgwzqsl7ycxhie/AABQB9L2J-XmCniwgyO3N83Ba?dl=0# dropbox folder] or see above video lists.

Please download the .mp4 files from the dropbox, otherwise they will run in preview mode, which limits the time.

== Not very recent talk slides ==

U Wisc Madison CS Sept 2012 [http://pages.cs.wisc.edu/~brecht/DoyleUWCSTooManySlides.pdf pdf]

UCSB Sage lectures, May 2012. (These are pdf files. Ask me for the ppt if you want to steal anything. I would be very flattered.)

[http://www.cds.caltech.edu/~doyle/wiki/images/7/76/1_DoyleSageLec1_May7_2012.pdf Lecture 1 May 7, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/1/16/2_DoyleSageLec2_May14_2012.pdf Lecture 2 May 14, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/8/8e/3_DoyleSageLec3_May21_2012.pdf Lecture 3 May 21, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/b/bd/4a_DoyleSageLec4_May30_2012.pdf Lecture 4a May 30, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/b/b7/4b_DoyleSageLec4_May30_2012.pdf Lecture 4b May 30, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/b/b3/UnivLawsArchs.pdf Summary: Universal laws and architectures (maybe start here)]

== Old Teaching Material ==

*[http://www.cds.caltech.edu/~doyle/wiki/images/a/a4/CDS212Lecture1.pdf CDS 212 Lecture 1 (2012)]

*[https://www.cds.caltech.edu/wiki/index.php/CDS_212_Fall_2011 CDS 212 (Fall 2011)]

*[http://www.cds.caltech.edu/~doyle/wiki/index.php?title=CDS213 CDS 213, Robust Control (Spring 2012)]
*[http://www.cds.caltech.edu/~murray/wiki/CDS_212_Fall_2010 CDS 212, Feedback Control Theory (Fall 2010)]
*[[CDS 213|The Architecture of Robust, Evolvable Networks (Wi10)]]

== Contact ==
{| width=100%
|- valign=top
| width=50% |

'''Mailing Address'''

John Doyle 
California Institute of Technology 
Control and Dynamical Systems, MC 107-81 
1200 E. California Blvd 
Pasadena, CA 91125 USA
| width=50% |

'''Contact information'''

E-mail: doyle AT caltech dot edu 
Office: 210 Annenberg, 
Phone: 626.395.4808 

'''Admin Assistant''': Nikki Fountleroy 
Office: 107 Steele, 
Email: nikkif AT caltech dot edu 
Phone: 626.395.4140 
|-
|

===Other Caltech links===

*[http://www.caltech.edu California Institute of Technology]
**[http://www.eas.caltech.edu Engineering and Applied Science Division]
***[http://www.be.caltech.edu/ Bioengineering Department]
***[http://www.cds.caltech.edu Control and Dynamical Systems Department]
***[http://www.ee2.caltech.edu/ Electrical Engineering Department]
|}

CDS 241 Course details (Spring 2018)

2017-09-26T01:33:55Z

Doyle: /* CDS 270 Course Details */

CDS 241 Course details (Spring 2018)

2017-09-26T01:33:28Z

Doyle: /* CDS 270 Course Details */

== CDS 270 Course Details ==

There are videos, slides, and reading in the subfolder '''New_CDS270_VideosSlidesPapers''' in the dropbox folder
[https://www.dropbox.com/sh/7bgwzqsl7ycxhie/AABQB9L2J-XmCniwgyO3N83Ba?dl=0 dropbox folder.]

I'm adding material various subfolders of CDS270, labeled to suggest their content. I'll continue to add subfolders with mixes of videos, slides, and reading. I'll try to make videos of the highest priority material.

'''Current topics are:'''

'''1.Overview''' These give a quick overview of the questions motivating this class, primarily using the human nervous system, but mentioning bacteria and the Internet. These will also be the first videos to watch for the class. There is also a folder with some related papers.

'''2.NeuroIntroTheory''' A quick introduction to the theory that connects speed/accuracy tradeoffs in spiking neurons with speed/accuracy tradeoffs at the system level.

'''3.BalanceWaterbed''' Summary of stick balancing tradeoffs including unstable poles and zeros. The "waterbed" effect and oscillations. Chaotic dynamics and sensitivity to initial conditions.

3.x1.ExtrasVision has extra slides on vision and visual illusions.

3.x2.TuringArchMiscDetails has more extra old slides on architecture details, with an emphasis on connecting with Turing's work.

'''4.MedPhysio&HeartRateVar ''' Videos, slides, and a ''PNAS'' paper on explaining cryptic patterns in heart rate variability using robust performance tradeoffs and optimal control theory.

'''5.BioGlycoOscillate''' Videos, slides, and a ''Science'' paper on explaining the mechanism underlying glycolytic oscillations at the cellular level. Also involves robust efficiency, robust control theory, and the waterbed effect. Lots of extra old slides on architecture in biology, emphasizing bacteria. New and more accessible theory explaining the ubiquity of cryptic oscillations in controlled systems.

'''6.DynamicsNorms''' A minimal introduction to dynamics, input-output responses, (finite) impulse response, and norms on signals and systems.

'''7.Turbulence''' Robust control applied to study the origin and nature of turbulence in the high shear flows that dominate much of technology and nature. Particular focus on large coherent structures, their connection with blunting of the turbulent profile, and the resulting impact on drag. Emphasizes collaborations with Dennice Gayme and Beverley McKeon.

'''8.SysLevelSyn''' System Level Synthesis is our new framework for doing distributed and localized control.

'''9.Javad''' Javad Lavaie gave guest lectures.

I'll continue to add to these, but at any time there will be a mix of materials, and not very well organized.

You might want to download the videos, as dropbox will run them in preview mode, which limits their length.

== Aims and Motivation ==

'''Aims''': Complex tech, bio, neuro, med, eco, and socio-econ networks have both strikingly universal shared architectural features and constraining "laws" but with extremely different domain specific details. This course will use familiar case studies to motivate a new mathematical framework for understanding these similarities and differences, emphasizing layering, dynamics, optimization, nonlinearity, learning, communications, and control, sparsity and structure, and tradeoffs between robustness, efficiency, and evolvability. The aim will be to establish a common core of concepts accessible to anyone at Caltech, with optional additional domain and math details more aimed at experts. Lectures will primarily be by video with class time devoted to discussions. Lots of live demos and games involving audience participation.

'''Motivating case studies and projects''' will be drawn from a variety of areas. Students with domain expertise can help form teams to explore using new theory in these areas. There will be videos and reading on these topics, but students are urged to suggest others.

''Neuroscience'': sensorimotor control, spiking neurons, and limits to performance; planning and reflex; modularity, plasticity, learning, and evolution; vision and the vestibular ocular reflex (VOR); balance and bipedalism; automation and (un)conscious; fMRI and EEG analysis; throwing and hitting a 100 mph fastball;

''Internet'': Software defined networking (SDN), Internet of things (IOT), Application driven networking (ADN), content centric, operating systems, Network function virtualization (NFV), routing, congestion control, end-to-end and local, protocol stacks, aggregation

''Microbial cell'': metabolism; glycolytic oscillations; stress response; signal transduction; gene regulation; evolution, horizontal gene transfer; immune mechanisms; pathogenesis; microbiomes; phage physiology;

''Power'': Future smartgrid; optimization, control; cascading outages; challenge of renewables; role of storage and controllable loads

''Ecosystems'': wildfire ecology; Mediterranean climates; fire in the earth system

''Medicine and physiology'': cardiovascular physiology, heart rate variability, (an)aerobic metabolism, fatigue, training; sepsis and shock; electrocardiographic diagnosis of acute myocardial infarction; development, wound healing, and cancer

''Physics'': multiscale and complexity; high shear flows, turbulence, coherent structures, blunting, and drag; statistical mechanics, fluctuation-dissipation, back action and measurement, uncertainty principles, quantum measurement; phase transitions, criticality, optimization;

''Social sciences'': behavorial economics, casinos, the hot hand fallacy (fallacy), (non)stationary stochastic process, and evolutionary psychology; risk and uncertainty; chimps, bonobos, baboons, and gorillas; orcas and elephants; ants and bees; violence; patriarchy and matriarchy; fear, anger, hatred; empathy, compassion; language; bipedalism and weapons; agriculture and owners, soldiers, and slaves; Egypt, Sparta, Athens, Rome, China; Adam Smith; American Civil War ; technology, industrialization, and automation; World wars and depressions; wealth inequality; the 60s (1860s and 1960s) and "rights"; financialization; tech and social networks; current politics and media; Putin, Trump, and Brexit;
[http://www.slate.com/blogs/wild_things/2014/05/22/animal_social_justice_equality_in_bonobos_chimps_monkeys_lions_baboons.html Article on animal social justice]

''Transitions in evolution, architecture, and complexity'': e.g. life, metabolism, ribosomes, oxygen, mitochondria, brains, flight, warm blood, maternal care, bipedalism, weapons, language, agriculture, states, money, industry, technology, IOT, ...

''Universal laws and architectures'': across all domains there are hard limits or "laws" on robustness vs efficiency, speed vs accuracy, with efficiency and robustness conservation laws that limit what is possible; universal architectures allow components to achieve what laws allow, and mix diverse components to create systems that achieve what no component can alone; universals including layering, hourglasses and bowties with thin waists and knots; planning and reflex layers; apps, OS, and hardware; horizontal swapping of apps, genes, memes; these are all largely unknown in science and poorly taught in engineering, with little or no theory, until recently; LEGOS as a model system; Darwin, Turing, Bode, Wiener, Shannon, Von Neumann, the death of cybernetics;

''Infectious hijacking'': layered architectures are vulnerable to infectious hijacking; mechanisms that swap apps, genes, and memes facilitate hijacking by viral, pathogenic versions; toxoplasmosis and zombie parasites; phage kill half the ocean's bacteria daily; network and automation technologies with increasingly dangerous, pervasive cybersecurity vulnerabilities; human's ultimate weakness may be strongly held beliefs (memes) that are contagious, false, dangerous, and unhealthy; parasites vs predators;

''New “sciences”'': complexity science; network science; edge of chaos; power laws; self-organized criticality; scale-free networks; small worlds; zombie science; hoaxiness; emergulence

'''Theory foundations''': We will aim for a more integrated and accessible treatment of control theory, dynamical systems, optimization, probability and statistics, machine learning, communications theory, and computational complexity. Focus on "deep" fragilities. Previous familiarity or study is helpful but not essential as the questions arising in the case studies can be largely appreciated with minimal math, though the answers go through layers of increasing theory complexity. Students who do have backgrounds in these areas will be particularly useful in teams with domain experts.

== Recommended lite reading (listening)==

These are popular books for a general audience available in audio format.

Nick Lane, ''The Vital Question: Energy, Evolution, and the Origins of Complex Life''
[http://www.audible.com/pd/Science-Technology/The-Vital-Question-Audiobook/B00YI0FGMA Audible]

Nick Lane, ''Life Ascending: The Ten Great Inventions of Evolution''
[http://www.audible.com/pd/Science-Technology/Life-Ascending-Audiobook/B003M6QNIM/ref=a_search_c4_1_2_srTtl?qid=1491062082&sr=1-2 Audible]

Robert M. Sapolsky, ''Behave: The Biology of Humans at Our Best and Worst''
[http://www.audible.com/pd/Science-Technology/Behave-Audiobook/B06XW3MVNF?ref_=a_wl_c1_1_3_ttl Audible]

Geoffrey G. Parker, Marshall W. Van Alstyne, Sangeet Paul Choudary, ''Platform Revolution: How Networked Markets Are Transforming the Economy - and How to Make Them Work for You''
[http://www.audible.com/pd/Business/Platform-Revolution-Audiobook/B01DDX7MJ2 Audible]

Ed Yong, ''I Contain Multitudes: The Microbes Within Us and a Grander View of Life''
[http://www.audible.com/pd/Science-Technology/I-Contain-Multitudes-Audiobook/B01FY85DKO Audible]

Michael Lewis, ''The Undoing Project: A Friendship That Changed Our Minds''
[http://www.audible.com/pd/Bios-Memoirs/The-Undoing-Project-Audiobook/B01KBM825G Audible]

Kathleen McAuliffe, ''This Is Your Brain on Parasites: How Tiny Creatures Manipulate Our Behavior and Shape Society''
[http://www.audible.com/pd/Science-Technology/This-Is-Your-Brain-on-Parasites-Audiobook/B01GOLTYSC Audible]

'''Social architecture'''

Noam Chomsky, ''Requiem for the American Dream: The Principles of Concentrated Wealth and Power''
[http://www.audible.com/pd/Nonfiction/Requiem-for-the-American-Dream-Audiobook/B06XC8TSDN Audible]

Robert J. Gordon, ''The Rise and Fall of American Growth: The U.S. Standard of Living Since the Civil War''
[http://www.audible.com/pd/Nonfiction/The-Rise-and-Fall-of-American-Growth-Audiobook/B01ITPUZ0W Audible]

Elizabeth Warren, ''This Fight Is Our Fight: The Battle to Save America's Middle Class''
[http://www.audible.com/pd/Bios-Memoirs/This-Fight-Is-Our-Fight-Audiobook/B06W9F3DPP Audible]

== Miscellaneous articles ==

[http://www.slate.com/blogs/wild_things/2014/05/22/animal_social_justice_equality_in_bonobos_chimps_monkeys_lions_baboons.html Article on animal social justice]

[https://www.theguardian.com/us-news/2017/sep/14/donald-trump-alpha-male-chimpanzee-behavior?CMP=Share_iOSApp_Other Article on Trump as chimp]

== What I'm hoping to listen to next ==

Main Page

2017-09-26T01:32:27Z

Doyle: /* Fall 2017 CDS 231 New Control Course */

<table border=1 width=100% style="color:black; " cellpadding="20" cellspacing="0">
<tr>
<td align=center width=20%> [[Image:Smallpic.JPG]]</td>
<td width=60% align=center>
John C. Doyle 道耀 

Jean-Lou Chameau Professor 
of Control and Dynamical Systems 
Electrical Engineering 
and BioEngineering 
Division of Engineering and Applied Science 
California Institute of Technology 

</td>
<td align=center width=20%>


[[#Contact|Contact]]

</td>
</tr></table>
{| align=center
|[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]
|}
<hr>
==Fall 2017 CDS 231 New Control Course==

'''For last spring's course: ''' See [[CDS 270 Course details (Spring 2017)]] for more

The aims of CDS 231 are similar to CDS 270 (Sp 2017) but with more emphasis on math details, and less on motivating case studies.

'''Aims''': Complex tech, bio, neuro, med, eco, and socio-econ networks have both strikingly universal shared architectural features and constraining "laws" but with extremely different domain specific details. The first half of the course will use familiar case studies to motivate a new mathematical framework for understanding these similarities and differences, emphasizing layering, dynamics, optimization, nonlinearity, learning, communications, and control, sparsity and structure, and tradeoffs between robustness, efficiency, and evolvability. Lectures will primarily be by video with class time devoted to discussions and lots of live demos and games involving audience participation. The second half of the term will be a fast review of core theory in robust and optimal control and a bit of nonlinear using SOSTOOLS.

To get started on the videos, and reading material, see the subfolder New_CDS231 in the dropbox folder:

[https://www.dropbox.com/sh/7bgwzqsl7ycxhie/AABQB9L2J-XmCniwgyO3N83Ba?dl=0 Dropbox folder]

See [[Course details]] for more details on 231 (nothing there yet).

==Brief Bio==

John Doyle is the Jean-Lou Chameau Professor of Control and Dynamical Systems, Electrical Engineer, and BioEngineering at Caltech, and received the BS&MS in EE, MIT (1977), and PhD in Math, UC Berkeley (1984)). He was a consultant at Honeywell Systems and Research Center from 1976 to 1990.

'''Research''' is on mathematical foundations for complex networks with applications in biology, technology, medicine, ecology, neuroscience, and multiscale physics that integrates theory from control, computation, communication, optimization, statistics (e.g. Machine Learning). An emphasis on universal laws and architectures, robustness/efficiency and speed/accuracy tradeoffs, adaptability, and evolvability and large scale systems with sparse, saturating, delayed, quantized, uncertain sensing, communications, computing, and actuation. Early work was on robustness of feedback control systems with applications to aerospace and process control. His students and research group developed software packages like the Matlab Robust Control Toolbox and the Systems Biology Markup Language (SBML).

'''Prizes, awards, records, championships''' include the 1990 IEEE Baker Prize (for all IEEE publications), also listed in the world top 10 “most important" papers in mathematics 1981-1993, IEEE Automatic Control Transactions Award (twice 1998, 1999), 1994 AACC American Control Conference Schuck Award, 2004 ACM Sigcomm Paper Prize and 2016 “test of time” award, and inclusion in Best Writing on Mathematics 2010. Individual awards include 1977 IEEE Power Hickernell, 1983 AACC Eckman, 1984 UC Berkeley Friedman, 1984 IEEE Centennial Outstanding Young Engineer (a one-time award for IEEE 100th anniversary), and 2004 IEEE Control Systems Field Award. Best known for fabulous friends, partner, colleagues, and students. Has held world and national records and championships in various sports, but is otherwise quite fragile.

[http://www.cds.caltech.edu/~doyle/wiki/images/a/ad/DoyleBibNIHstyle2016.pdf NIH Style Bio]

[http://www.cds.caltech.edu/~doyle/wiki/index.php?title=J._Doyle%27s_Bio_Athletics (Old) Athletics Bio]

==Somewhat Recent Application Papers==

For recent theory papers see [http://www.cds.caltech.edu/~nmatni Nikolai Matni]

For fairly complete list of references see [https://scholar.google.com/citations?user=C6DtGmMAAAAJ&hl=en Google Scholar]

'''Neuroscience and Machine Learning''' : [http://www.cds.caltech.edu/~doyle/wiki/images/6/62/NECO_a_00936.pdf Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings] Das, Sampson, Lainscsek, Muller, Lin, Doyle, Cash, Halgren, Sejnowski, ''Neural Computation'', 2017

'''Education and Neuroscience''': [http://www.cds.caltech.edu/~doyle/wiki/images/2/2f/CDCDoyleTutorial.pdf Tutorial on education] for Conference on Decision and Control, 2016

'''Medicine''': [http://www.cds.caltech.edu/~doyle/wiki/images/1/11/2014PNAS_HRV.PDF Robust efficiency and actuator saturation explain healthy heart rate control and variability]‎ Li, Cruz, Chien, Sojoudi, Recht, Stone, Csete, Bahmiller, Doyle (2014), ''P Natl Acad Sci USA'' 111 (33)

'''Medicine''': [http://www.cds.caltech.edu/~doyle/wiki/images/0/06/SepsisJCritCareNihms.pdf Sepsis: Something Old, Something New, and a Systems View] ''J Crit Care.'' (2012)

'''Universal architectures''': [http://www.cds.caltech.edu/~doyle/wiki/images/8/82/OnlineFinalPNASSackler2011.pdf Architecture, constraints, and behavior],
JC Doyle, MC Csete,
''P Natl Acad Sci USA'', vol. 108, Sup 3 15624-15630

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/7/71/CorrectedScienceGlycolyticOscOnlineFinal.pdf Gycolytic oscillations and limits on robust efficiency],
FA Chandra, G Buzi, JC Doyle
''Science'' 333(6039):187-192, July 2011

'''Turbulence''': [http://www.cds.caltech.edu/~doyle/wiki/images/8/87/PhysFluids_23_065108.pdf Amplification and nonlinear mechanisms in plane Couette flow.],
D Gayme, B McKeon, B Bamieh, A Papachristodolou, and J Doyle.
''Physics of Fluids'' v23:6:065108 (2011)

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/a/a2/6.AutomaticaJune2011.pdf Analysis of autocatalytic networks in biology],
G Buzi, U Topcu, J Doyle,
''Automatica'' 47:1123-1130 (2011)

'''Earthquakes''': [http://www.cds.caltech.edu/~doyle/wiki/images/a/a1/EarthquakesCalFaults.pdf The magnitude distribution of earthquakes near Southern California faults]
Page, Alderson, and Doyle
''JOURNAL OF GEOPHYSICAL RESEARCH'', VOL. 116, (2011)

'''Physics''': [http://www.cds.caltech.edu/~doyle/wiki/images/c/c4/2.IEEE_TransAutoCtrl_Feb_2011_.pdf On Lossless Approximations, the Fluctuation-Dissipation Theorem, and Limitations of Measurements],
H Sandberg, JC Delvenne, JC Doyle,
''IEEE Trans Auto Control'', v56:2, 293-308 (2011)

'''Wireless''': [http://www.cds.caltech.edu/~doyle/wiki/images/6/62/9.ComputerNetworksFeb2011.pdf Cross-layer design in multihop wireless networks],
L Chen, SH Low, and JC Doyle,
''Computer Networks'' 55:480–496 (2011)

'''Circuits''': [http://ieeexplore.ieee.org/document/5635369/?arnumber=5635369 Solving Large-Scale Hybrid Circuit-Antenna Problems] Lavaei, Babakhani, Hajimiri and Doyle, I''EEE Transactions on Circuits and Systems'' I, vol. 58, no. 2, pp. 374-387, Feb. 2011.

'''Complexity''': [http://www.cds.caltech.edu/~doyle/wiki/images/d/de/1.IEEE_TransSysMCyber_AldersonDoyle-July2010.pdf Contrasting Views of Complexity and Their Implications For Network-Centric Infrastructures]
Alderson and Doyle, ''IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS—PART A: SYSTEMS AND HUMANS'', VOL. 40, NO. 4, JULY 2010

'''Internet''': [http://www.cds.caltech.edu/~doyle/wiki/images/f/f8/AMSNoticesInternet.pdf Mathematics and the Internet: A Source of Enormous Confusion and Great Potential] Willinger, Alderson, and Doyle, ''Notices of the AMS'' Volume 56, Number 5 (2009)

'''Fire''': [http://www.cds.caltech.edu/~doyle/wiki/images/4/4a/ScienceFire.pdf Fire in the Earth System], ''Science'' 324, 481 (2009)

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/b/b7/Cell.pdf Robustness of Cellular Functions], Stelling, Sauer, Szallasi, Doyle, and Doyle, ''Cell'', 2004

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/0/05/ScienceOnlinePDF.pdf Reverse Engineering of Biological Complexity], Csete and Doyle, ''Science'', (2002)

*[[Papers|'''More Papers''']]

==Videos and slides==

I have lots of slides and video material in this [https://www.dropbox.com/sh/7bgwzqsl7ycxhie/AABQB9L2J-XmCniwgyO3N83Ba?dl=0 large dropbox folder.]

The videos are in the subfolder called [https://www.dropbox.com/sh/0chagxkdmmzngt7/AAA55Hg1TwGdgk27KmJM1mrNa?dl=0 VideosSlidesPapers]. I recommend downloading the videos since they may otherwise play in a truncated preview mode.

A good starting point is in 1.0.NewestIntroNeuroMed with more details in 2.0.OverviewWithNeuroEmphasis and 2.2 IntroLawsArchXtraDetails.

There are also 2 short intro videos in the top folder that give an overview of the rest, but then there are much more details in other subfolders, hopefully the names are suggestive...

There is also a whole subfolder on glycolytic oscillations and another on heart rate variability. These are our best and most accessible case studies in biology and medicine.

There are papers above with additional technical details.

==News==

* [https://engineering.jhu.edu/gayme/people/ Dennice Gayme] (Hopkins) named Carol Linde Croft Faculty Scholar.

* [http://nali.seas.harvard.edu/ Na (Lina) Li] (Harvard) gets NSF CAREER and AFOSR YI awards.

* [http://ieor.berkeley.edu/~lavaei/Awards.html Javad Lavaei] (Berkeley) gets SIAM Control and Systems Theory Prize and AACC Eckman, and too many other awards to list.

*Old: [http://discovermagazine.com/2007/nov/this-man-wants-to-control-the-internet Discover magazine] "This man wants to control the internet" by Carl Zimmer, Discover magazine, 2008.

*Newer: [https://rigorandrelevance.wordpress.com/author/doyleatcaltech/ Blog and new videos] Follow link to dropbox folder with accessible introductory videos and case studies in neuroscience, cell biology, and medical physiology. Our you can go directly to the [https://www.dropbox.com/sh/7bgwzqsl7ycxhie/AABQB9L2J-XmCniwgyO3N83Ba?dl=0# dropbox folder] or see above video lists.

Please download the .mp4 files from the dropbox, otherwise they will run in preview mode, which limits the time.

== Not very recent talk slides ==

U Wisc Madison CS Sept 2012 [http://pages.cs.wisc.edu/~brecht/DoyleUWCSTooManySlides.pdf pdf]

UCSB Sage lectures, May 2012. (These are pdf files. Ask me for the ppt if you want to steal anything. I would be very flattered.)

[http://www.cds.caltech.edu/~doyle/wiki/images/7/76/1_DoyleSageLec1_May7_2012.pdf Lecture 1 May 7, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/1/16/2_DoyleSageLec2_May14_2012.pdf Lecture 2 May 14, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/8/8e/3_DoyleSageLec3_May21_2012.pdf Lecture 3 May 21, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/b/bd/4a_DoyleSageLec4_May30_2012.pdf Lecture 4a May 30, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/b/b7/4b_DoyleSageLec4_May30_2012.pdf Lecture 4b May 30, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/b/b3/UnivLawsArchs.pdf Summary: Universal laws and architectures (maybe start here)]

== Old Teaching Material ==

*[http://www.cds.caltech.edu/~doyle/wiki/images/a/a4/CDS212Lecture1.pdf CDS 212 Lecture 1 (2012)]

*[https://www.cds.caltech.edu/wiki/index.php/CDS_212_Fall_2011 CDS 212 (Fall 2011)]

*[http://www.cds.caltech.edu/~doyle/wiki/index.php?title=CDS213 CDS 213, Robust Control (Spring 2012)]
*[http://www.cds.caltech.edu/~murray/wiki/CDS_212_Fall_2010 CDS 212, Feedback Control Theory (Fall 2010)]
*[[CDS 213|The Architecture of Robust, Evolvable Networks (Wi10)]]

== Contact ==
{| width=100%
|- valign=top
| width=50% |

'''Mailing Address'''

John Doyle 
California Institute of Technology 
Control and Dynamical Systems, MC 107-81 
1200 E. California Blvd 
Pasadena, CA 91125 USA
| width=50% |

'''Contact information'''

E-mail: doyle AT caltech dot edu 
Office: 210 Annenberg, 
Phone: 626.395.4808 

'''Admin Assistant''': Nikki Fountleroy 
Office: 107 Steele, 
Email: nikkif AT caltech dot edu 
Phone: 626.395.4140 
|-
|

===Other Caltech links===

*[http://www.caltech.edu California Institute of Technology]
**[http://www.eas.caltech.edu Engineering and Applied Science Division]
***[http://www.be.caltech.edu/ Bioengineering Department]
***[http://www.cds.caltech.edu Control and Dynamical Systems Department]
***[http://www.ee2.caltech.edu/ Electrical Engineering Department]
|}

Main Page

2017-09-25T23:18:57Z

Doyle: /* Fall 2017 CDS 231 New Control Course */

<table border=1 width=100% style="color:black; " cellpadding="20" cellspacing="0">
<tr>
<td align=center width=20%> [[Image:Smallpic.JPG]]</td>
<td width=60% align=center>
John C. Doyle 道耀 

Jean-Lou Chameau Professor 
of Control and Dynamical Systems 
Electrical Engineering 
and BioEngineering 
Division of Engineering and Applied Science 
California Institute of Technology 

</td>
<td align=center width=20%>


[[#Contact|Contact]]

</td>
</tr></table>
{| align=center
|[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]||[[Image:Blossoms900strip.jpg]]
|}
<hr>
==Fall 2017 CDS 231 New Control Course==

For more details on 231: See [[Course details]] for more

'''For last spring's course: ''' See [[CDS 270 Course details (Spring 2017)]] for more

The aims of CDS 231 are similar to CDS 270 (Sp 2017) but with more emphasis on math details, and less on motivating case studies.

'''Aims''': Complex tech, bio, neuro, med, eco, and socio-econ networks have both strikingly universal shared architectural features and constraining "laws" but with extremely different domain specific details. The first half of the course will use familiar case studies to motivate a new mathematical framework for understanding these similarities and differences, emphasizing layering, dynamics, optimization, nonlinearity, learning, communications, and control, sparsity and structure, and tradeoffs between robustness, efficiency, and evolvability. Lectures will primarily be by video with class time devoted to discussions and lots of live demos and games involving audience participation. The second half of the term will be a fast review of core theory in robust and optimal control and a bit of nonlinear using SOSTOOLS.

To get started on the videos, and reading material, see the subfolder New_CDS231 in the dropbox folder:

[https://www.dropbox.com/sh/7bgwzqsl7ycxhie/AABQB9L2J-XmCniwgyO3N83Ba?dl=0 Dropbox folder]

==Brief Bio==

John Doyle is the Jean-Lou Chameau Professor of Control and Dynamical Systems, Electrical Engineer, and BioEngineering at Caltech, and received the BS&MS in EE, MIT (1977), and PhD in Math, UC Berkeley (1984)). He was a consultant at Honeywell Systems and Research Center from 1976 to 1990.

'''Research''' is on mathematical foundations for complex networks with applications in biology, technology, medicine, ecology, neuroscience, and multiscale physics that integrates theory from control, computation, communication, optimization, statistics (e.g. Machine Learning). An emphasis on universal laws and architectures, robustness/efficiency and speed/accuracy tradeoffs, adaptability, and evolvability and large scale systems with sparse, saturating, delayed, quantized, uncertain sensing, communications, computing, and actuation. Early work was on robustness of feedback control systems with applications to aerospace and process control. His students and research group developed software packages like the Matlab Robust Control Toolbox and the Systems Biology Markup Language (SBML).

'''Prizes, awards, records, championships''' include the 1990 IEEE Baker Prize (for all IEEE publications), also listed in the world top 10 “most important" papers in mathematics 1981-1993, IEEE Automatic Control Transactions Award (twice 1998, 1999), 1994 AACC American Control Conference Schuck Award, 2004 ACM Sigcomm Paper Prize and 2016 “test of time” award, and inclusion in Best Writing on Mathematics 2010. Individual awards include 1977 IEEE Power Hickernell, 1983 AACC Eckman, 1984 UC Berkeley Friedman, 1984 IEEE Centennial Outstanding Young Engineer (a one-time award for IEEE 100th anniversary), and 2004 IEEE Control Systems Field Award. Best known for fabulous friends, partner, colleagues, and students. Has held world and national records and championships in various sports, but is otherwise quite fragile.

[http://www.cds.caltech.edu/~doyle/wiki/images/a/ad/DoyleBibNIHstyle2016.pdf NIH Style Bio]

[http://www.cds.caltech.edu/~doyle/wiki/index.php?title=J._Doyle%27s_Bio_Athletics (Old) Athletics Bio]

==Somewhat Recent Application Papers==

For recent theory papers see [http://www.cds.caltech.edu/~nmatni Nikolai Matni]

For fairly complete list of references see [https://scholar.google.com/citations?user=C6DtGmMAAAAJ&hl=en Google Scholar]

'''Neuroscience and Machine Learning''' : [http://www.cds.caltech.edu/~doyle/wiki/images/6/62/NECO_a_00936.pdf Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings] Das, Sampson, Lainscsek, Muller, Lin, Doyle, Cash, Halgren, Sejnowski, ''Neural Computation'', 2017

'''Education and Neuroscience''': [http://www.cds.caltech.edu/~doyle/wiki/images/2/2f/CDCDoyleTutorial.pdf Tutorial on education] for Conference on Decision and Control, 2016

'''Medicine''': [http://www.cds.caltech.edu/~doyle/wiki/images/1/11/2014PNAS_HRV.PDF Robust efficiency and actuator saturation explain healthy heart rate control and variability]‎ Li, Cruz, Chien, Sojoudi, Recht, Stone, Csete, Bahmiller, Doyle (2014), ''P Natl Acad Sci USA'' 111 (33)

'''Medicine''': [http://www.cds.caltech.edu/~doyle/wiki/images/0/06/SepsisJCritCareNihms.pdf Sepsis: Something Old, Something New, and a Systems View] ''J Crit Care.'' (2012)

'''Universal architectures''': [http://www.cds.caltech.edu/~doyle/wiki/images/8/82/OnlineFinalPNASSackler2011.pdf Architecture, constraints, and behavior],
JC Doyle, MC Csete,
''P Natl Acad Sci USA'', vol. 108, Sup 3 15624-15630

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/7/71/CorrectedScienceGlycolyticOscOnlineFinal.pdf Gycolytic oscillations and limits on robust efficiency],
FA Chandra, G Buzi, JC Doyle
''Science'' 333(6039):187-192, July 2011

'''Turbulence''': [http://www.cds.caltech.edu/~doyle/wiki/images/8/87/PhysFluids_23_065108.pdf Amplification and nonlinear mechanisms in plane Couette flow.],
D Gayme, B McKeon, B Bamieh, A Papachristodolou, and J Doyle.
''Physics of Fluids'' v23:6:065108 (2011)

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/a/a2/6.AutomaticaJune2011.pdf Analysis of autocatalytic networks in biology],
G Buzi, U Topcu, J Doyle,
''Automatica'' 47:1123-1130 (2011)

'''Earthquakes''': [http://www.cds.caltech.edu/~doyle/wiki/images/a/a1/EarthquakesCalFaults.pdf The magnitude distribution of earthquakes near Southern California faults]
Page, Alderson, and Doyle
''JOURNAL OF GEOPHYSICAL RESEARCH'', VOL. 116, (2011)

'''Physics''': [http://www.cds.caltech.edu/~doyle/wiki/images/c/c4/2.IEEE_TransAutoCtrl_Feb_2011_.pdf On Lossless Approximations, the Fluctuation-Dissipation Theorem, and Limitations of Measurements],
H Sandberg, JC Delvenne, JC Doyle,
''IEEE Trans Auto Control'', v56:2, 293-308 (2011)

'''Wireless''': [http://www.cds.caltech.edu/~doyle/wiki/images/6/62/9.ComputerNetworksFeb2011.pdf Cross-layer design in multihop wireless networks],
L Chen, SH Low, and JC Doyle,
''Computer Networks'' 55:480–496 (2011)

'''Circuits''': [http://ieeexplore.ieee.org/document/5635369/?arnumber=5635369 Solving Large-Scale Hybrid Circuit-Antenna Problems] Lavaei, Babakhani, Hajimiri and Doyle, I''EEE Transactions on Circuits and Systems'' I, vol. 58, no. 2, pp. 374-387, Feb. 2011.

'''Complexity''': [http://www.cds.caltech.edu/~doyle/wiki/images/d/de/1.IEEE_TransSysMCyber_AldersonDoyle-July2010.pdf Contrasting Views of Complexity and Their Implications For Network-Centric Infrastructures]
Alderson and Doyle, ''IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS—PART A: SYSTEMS AND HUMANS'', VOL. 40, NO. 4, JULY 2010

'''Internet''': [http://www.cds.caltech.edu/~doyle/wiki/images/f/f8/AMSNoticesInternet.pdf Mathematics and the Internet: A Source of Enormous Confusion and Great Potential] Willinger, Alderson, and Doyle, ''Notices of the AMS'' Volume 56, Number 5 (2009)

'''Fire''': [http://www.cds.caltech.edu/~doyle/wiki/images/4/4a/ScienceFire.pdf Fire in the Earth System], ''Science'' 324, 481 (2009)

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/b/b7/Cell.pdf Robustness of Cellular Functions], Stelling, Sauer, Szallasi, Doyle, and Doyle, ''Cell'', 2004

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/0/05/ScienceOnlinePDF.pdf Reverse Engineering of Biological Complexity], Csete and Doyle, ''Science'', (2002)

*[[Papers|'''More Papers''']]

==Videos and slides==

I have lots of slides and video material in this [https://www.dropbox.com/sh/7bgwzqsl7ycxhie/AABQB9L2J-XmCniwgyO3N83Ba?dl=0 large dropbox folder.]

The videos are in the subfolder called [https://www.dropbox.com/sh/0chagxkdmmzngt7/AAA55Hg1TwGdgk27KmJM1mrNa?dl=0 VideosSlidesPapers]. I recommend downloading the videos since they may otherwise play in a truncated preview mode.

A good starting point is in 1.0.NewestIntroNeuroMed with more details in 2.0.OverviewWithNeuroEmphasis and 2.2 IntroLawsArchXtraDetails.

There are also 2 short intro videos in the top folder that give an overview of the rest, but then there are much more details in other subfolders, hopefully the names are suggestive...

There is also a whole subfolder on glycolytic oscillations and another on heart rate variability. These are our best and most accessible case studies in biology and medicine.

There are papers above with additional technical details.

==News==

* [https://engineering.jhu.edu/gayme/people/ Dennice Gayme] (Hopkins) named Carol Linde Croft Faculty Scholar.

* [http://nali.seas.harvard.edu/ Na (Lina) Li] (Harvard) gets NSF CAREER and AFOSR YI awards.

* [http://ieor.berkeley.edu/~lavaei/Awards.html Javad Lavaei] (Berkeley) gets SIAM Control and Systems Theory Prize and AACC Eckman, and too many other awards to list.

*Old: [http://discovermagazine.com/2007/nov/this-man-wants-to-control-the-internet Discover magazine] "This man wants to control the internet" by Carl Zimmer, Discover magazine, 2008.

*Newer: [https://rigorandrelevance.wordpress.com/author/doyleatcaltech/ Blog and new videos] Follow link to dropbox folder with accessible introductory videos and case studies in neuroscience, cell biology, and medical physiology. Our you can go directly to the [https://www.dropbox.com/sh/7bgwzqsl7ycxhie/AABQB9L2J-XmCniwgyO3N83Ba?dl=0# dropbox folder] or see above video lists.

Please download the .mp4 files from the dropbox, otherwise they will run in preview mode, which limits the time.

== Not very recent talk slides ==

U Wisc Madison CS Sept 2012 [http://pages.cs.wisc.edu/~brecht/DoyleUWCSTooManySlides.pdf pdf]

UCSB Sage lectures, May 2012. (These are pdf files. Ask me for the ppt if you want to steal anything. I would be very flattered.)

[http://www.cds.caltech.edu/~doyle/wiki/images/7/76/1_DoyleSageLec1_May7_2012.pdf Lecture 1 May 7, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/1/16/2_DoyleSageLec2_May14_2012.pdf Lecture 2 May 14, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/8/8e/3_DoyleSageLec3_May21_2012.pdf Lecture 3 May 21, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/b/bd/4a_DoyleSageLec4_May30_2012.pdf Lecture 4a May 30, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/b/b7/4b_DoyleSageLec4_May30_2012.pdf Lecture 4b May 30, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/b/b3/UnivLawsArchs.pdf Summary: Universal laws and architectures (maybe start here)]

== Old Teaching Material ==

*[http://www.cds.caltech.edu/~doyle/wiki/images/a/a4/CDS212Lecture1.pdf CDS 212 Lecture 1 (2012)]

*[https://www.cds.caltech.edu/wiki/index.php/CDS_212_Fall_2011 CDS 212 (Fall 2011)]

*[http://www.cds.caltech.edu/~doyle/wiki/index.php?title=CDS213 CDS 213, Robust Control (Spring 2012)]
*[http://www.cds.caltech.edu/~murray/wiki/CDS_212_Fall_2010 CDS 212, Feedback Control Theory (Fall 2010)]
*[[CDS 213|The Architecture of Robust, Evolvable Networks (Wi10)]]

== Contact ==
{| width=100%
|- valign=top
| width=50% |

'''Mailing Address'''

John Doyle 
California Institute of Technology 
Control and Dynamical Systems, MC 107-81 
1200 E. California Blvd 
Pasadena, CA 91125 USA
| width=50% |

'''Contact information'''

E-mail: doyle AT caltech dot edu 
Office: 210 Annenberg, 
Phone: 626.395.4808 

'''Admin Assistant''': Nikki Fountleroy 
Office: 107 Steele, 
Email: nikkif AT caltech dot edu 
Phone: 626.395.4140 
|-
|

===Other Caltech links===

*[http://www.caltech.edu California Institute of Technology]
**[http://www.eas.caltech.edu Engineering and Applied Science Division]
***[http://www.be.caltech.edu/ Bioengineering Department]
***[http://www.cds.caltech.edu Control and Dynamical Systems Department]
***[http://www.ee2.caltech.edu/ Electrical Engineering Department]
|}

Main Page

2017-09-17T21:44:15Z

Doyle: /* Brief Bio */

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John C. Doyle 道耀 

Jean-Lou Chameau Professor 
of Control and Dynamical Systems 
Electrical Engineering 
and BioEngineering 
Division of Engineering and Applied Science 
California Institute of Technology 

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[[#Contact|Contact]]

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<hr>
==Fall 2017 CDS 231 New Control Course==

For more details: See [[Course details]] for more

'''For last spring's course: ''' See [[CDS 270 Course details (Spring 2017)]] for more

This is from last spring (CDS 270). The aims of CDS 231 are similar but with more emphasis on math details, and less on motivating case studies.

'''Aims''': Complex tech, bio, neuro, med, eco, and socio-econ networks have both strikingly universal shared architectural features and constraining "laws" but with extremely different domain specific details. This course will use familiar case studies to motivate a new mathematical framework for understanding these similarities and differences, emphasizing layering, dynamics, optimization, nonlinearity, learning, communications, and control, sparsity and structure, and tradeoffs between robustness, efficiency, and evolvability. The aim will be to establish a common core of concepts accessible to anyone at Caltech, with optional additional domain and math details more aimed at experts. Lectures will primarily be by video with class time devoted to discussions. Lots of live demos and games involving audience participation.

'''For more details: ''' See [[Course detailsCDS 270 Course details (Spring 2017)]] for more

==Brief Bio==

John Doyle is the Jean-Lou Chameau Professor of Control and Dynamical Systems, Electrical Engineer, and BioEngineering at Caltech, and received the BS&MS in EE, MIT (1977), and PhD in Math, UC Berkeley (1984)). He was a consultant at Honeywell Systems and Research Center from 1976 to 1990.

'''Research''' is on mathematical foundations for complex networks with applications in biology, technology, medicine, ecology, neuroscience, and multiscale physics that integrates theory from control, computation, communication, optimization, statistics (e.g. Machine Learning). An emphasis on universal laws and architectures, robustness/efficiency and speed/accuracy tradeoffs, adaptability, and evolvability and large scale systems with sparse, saturating, delayed, quantized, uncertain sensing, communications, computing, and actuation. Early work was on robustness of feedback control systems with applications to aerospace and process control. His students and research group developed software packages like the Matlab Robust Control Toolbox and the Systems Biology Markup Language (SBML).

'''Prizes, awards, records, championships''' include the 1990 IEEE Baker Prize (for all IEEE publications), also listed in the world top 10 “most important" papers in mathematics 1981-1993, IEEE Automatic Control Transactions Award (twice 1998, 1999), 1994 AACC American Control Conference Schuck Award, 2004 ACM Sigcomm Paper Prize and 2016 “test of time” award, and inclusion in Best Writing on Mathematics 2010. Individual awards include 1977 IEEE Power Hickernell, 1983 AACC Eckman, 1984 UC Berkeley Friedman, 1984 IEEE Centennial Outstanding Young Engineer (a one-time award for IEEE 100th anniversary), and 2004 IEEE Control Systems Field Award. Best known for fabulous friends, partner, colleagues, and students. Has held world and national records and championships in various sports, but is otherwise quite fragile.

[http://www.cds.caltech.edu/~doyle/wiki/images/a/ad/DoyleBibNIHstyle2016.pdf NIH Style Bio]

[http://www.cds.caltech.edu/~doyle/wiki/index.php?title=J._Doyle%27s_Bio_Athletics (Old) Athletics Bio]

==Somewhat Recent Application Papers==

For recent theory papers see [http://www.cds.caltech.edu/~nmatni Nikolai Matni]

For fairly complete list of references see [https://scholar.google.com/citations?user=C6DtGmMAAAAJ&hl=en Google Scholar]

'''Neuroscience and Machine Learning''' : [http://www.cds.caltech.edu/~doyle/wiki/images/6/62/NECO_a_00936.pdf Interpretation of the Precision Matrix and Its Application in Estimating Sparse Brain Connectivity during Sleep Spindles from Human Electrocorticography Recordings] Das, Sampson, Lainscsek, Muller, Lin, Doyle, Cash, Halgren, Sejnowski, ''Neural Computation'', 2017

'''Education and Neuroscience''': [http://www.cds.caltech.edu/~doyle/wiki/images/2/2f/CDCDoyleTutorial.pdf Tutorial on education] for Conference on Decision and Control, 2016

'''Medicine''': [http://www.cds.caltech.edu/~doyle/wiki/images/1/11/2014PNAS_HRV.PDF Robust efficiency and actuator saturation explain healthy heart rate control and variability]‎ Li, Cruz, Chien, Sojoudi, Recht, Stone, Csete, Bahmiller, Doyle (2014), ''P Natl Acad Sci USA'' 111 (33)

'''Medicine''': [http://www.cds.caltech.edu/~doyle/wiki/images/0/06/SepsisJCritCareNihms.pdf Sepsis: Something Old, Something New, and a Systems View] ''J Crit Care.'' (2012)

'''Universal architectures''': [http://www.cds.caltech.edu/~doyle/wiki/images/8/82/OnlineFinalPNASSackler2011.pdf Architecture, constraints, and behavior],
JC Doyle, MC Csete,
''P Natl Acad Sci USA'', vol. 108, Sup 3 15624-15630

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/7/71/CorrectedScienceGlycolyticOscOnlineFinal.pdf Gycolytic oscillations and limits on robust efficiency],
FA Chandra, G Buzi, JC Doyle
''Science'' 333(6039):187-192, July 2011

'''Turbulence''': [http://www.cds.caltech.edu/~doyle/wiki/images/8/87/PhysFluids_23_065108.pdf Amplification and nonlinear mechanisms in plane Couette flow.],
D Gayme, B McKeon, B Bamieh, A Papachristodolou, and J Doyle.
''Physics of Fluids'' v23:6:065108 (2011)

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/a/a2/6.AutomaticaJune2011.pdf Analysis of autocatalytic networks in biology],
G Buzi, U Topcu, J Doyle,
''Automatica'' 47:1123-1130 (2011)

'''Earthquakes''': [http://www.cds.caltech.edu/~doyle/wiki/images/a/a1/EarthquakesCalFaults.pdf The magnitude distribution of earthquakes near Southern California faults]
Page, Alderson, and Doyle
''JOURNAL OF GEOPHYSICAL RESEARCH'', VOL. 116, (2011)

'''Physics''': [http://www.cds.caltech.edu/~doyle/wiki/images/c/c4/2.IEEE_TransAutoCtrl_Feb_2011_.pdf On Lossless Approximations, the Fluctuation-Dissipation Theorem, and Limitations of Measurements],
H Sandberg, JC Delvenne, JC Doyle,
''IEEE Trans Auto Control'', v56:2, 293-308 (2011)

'''Wireless''': [http://www.cds.caltech.edu/~doyle/wiki/images/6/62/9.ComputerNetworksFeb2011.pdf Cross-layer design in multihop wireless networks],
L Chen, SH Low, and JC Doyle,
''Computer Networks'' 55:480–496 (2011)

'''Circuits''': [http://ieeexplore.ieee.org/document/5635369/?arnumber=5635369 Solving Large-Scale Hybrid Circuit-Antenna Problems] Lavaei, Babakhani, Hajimiri and Doyle, I''EEE Transactions on Circuits and Systems'' I, vol. 58, no. 2, pp. 374-387, Feb. 2011.

'''Complexity''': [http://www.cds.caltech.edu/~doyle/wiki/images/d/de/1.IEEE_TransSysMCyber_AldersonDoyle-July2010.pdf Contrasting Views of Complexity and Their Implications For Network-Centric Infrastructures]
Alderson and Doyle, ''IEEE TRANSACTIONS ON SYSTEMS, MAN, AND CYBERNETICS—PART A: SYSTEMS AND HUMANS'', VOL. 40, NO. 4, JULY 2010

'''Internet''': [http://www.cds.caltech.edu/~doyle/wiki/images/f/f8/AMSNoticesInternet.pdf Mathematics and the Internet: A Source of Enormous Confusion and Great Potential] Willinger, Alderson, and Doyle, ''Notices of the AMS'' Volume 56, Number 5 (2009)

'''Fire''': [http://www.cds.caltech.edu/~doyle/wiki/images/4/4a/ScienceFire.pdf Fire in the Earth System], ''Science'' 324, 481 (2009)

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/b/b7/Cell.pdf Robustness of Cellular Functions], Stelling, Sauer, Szallasi, Doyle, and Doyle, ''Cell'', 2004

'''Biology''': [http://www.cds.caltech.edu/~doyle/wiki/images/0/05/ScienceOnlinePDF.pdf Reverse Engineering of Biological Complexity], Csete and Doyle, ''Science'', (2002)

*[[Papers|'''More Papers''']]

==Videos and slides==

I have lots of slides and video material in this [https://www.dropbox.com/sh/7bgwzqsl7ycxhie/AABQB9L2J-XmCniwgyO3N83Ba?dl=0 large dropbox folder.]

The videos are in the subfolder called [https://www.dropbox.com/sh/0chagxkdmmzngt7/AAA55Hg1TwGdgk27KmJM1mrNa?dl=0 VideosSlidesPapers]. I recommend downloading the videos since they may otherwise play in a truncated preview mode.

A good starting point is in 1.0.NewestIntroNeuroMed with more details in 2.0.OverviewWithNeuroEmphasis and 2.2 IntroLawsArchXtraDetails.

There are also 2 short intro videos in the top folder that give an overview of the rest, but then there are much more details in other subfolders, hopefully the names are suggestive...

There is also a whole subfolder on glycolytic oscillations and another on heart rate variability. These are our best and most accessible case studies in biology and medicine.

There are papers above with additional technical details.

==News==

* [https://engineering.jhu.edu/gayme/people/ Dennice Gayme] (Hopkins) named Carol Linde Croft Faculty Scholar.

* [http://nali.seas.harvard.edu/ Na (Lina) Li] (Harvard) gets NSF CAREER and AFOSR YI awards.

* [http://ieor.berkeley.edu/~lavaei/Awards.html Javad Lavaei] (Berkeley) gets SIAM Control and Systems Theory Prize and AACC Eckman, and too many other awards to list.

*Old: [http://discovermagazine.com/2007/nov/this-man-wants-to-control-the-internet Discover magazine] "This man wants to control the internet" by Carl Zimmer, Discover magazine, 2008.

*Newer: [https://rigorandrelevance.wordpress.com/author/doyleatcaltech/ Blog and new videos] Follow link to dropbox folder with accessible introductory videos and case studies in neuroscience, cell biology, and medical physiology. Our you can go directly to the [https://www.dropbox.com/sh/7bgwzqsl7ycxhie/AABQB9L2J-XmCniwgyO3N83Ba?dl=0# dropbox folder] or see above video lists.

Please download the .mp4 files from the dropbox, otherwise they will run in preview mode, which limits the time.

== Not very recent talk slides ==

U Wisc Madison CS Sept 2012 [http://pages.cs.wisc.edu/~brecht/DoyleUWCSTooManySlides.pdf pdf]

UCSB Sage lectures, May 2012. (These are pdf files. Ask me for the ppt if you want to steal anything. I would be very flattered.)

[http://www.cds.caltech.edu/~doyle/wiki/images/7/76/1_DoyleSageLec1_May7_2012.pdf Lecture 1 May 7, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/1/16/2_DoyleSageLec2_May14_2012.pdf Lecture 2 May 14, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/8/8e/3_DoyleSageLec3_May21_2012.pdf Lecture 3 May 21, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/b/bd/4a_DoyleSageLec4_May30_2012.pdf Lecture 4a May 30, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/b/b7/4b_DoyleSageLec4_May30_2012.pdf Lecture 4b May 30, 2012]

[http://www.cds.caltech.edu/~doyle/wiki/images/b/b3/UnivLawsArchs.pdf Summary: Universal laws and architectures (maybe start here)]

== Old Teaching Material ==

*[http://www.cds.caltech.edu/~doyle/wiki/images/a/a4/CDS212Lecture1.pdf CDS 212 Lecture 1 (2012)]

*[https://www.cds.caltech.edu/wiki/index.php/CDS_212_Fall_2011 CDS 212 (Fall 2011)]

*[http://www.cds.caltech.edu/~doyle/wiki/index.php?title=CDS213 CDS 213, Robust Control (Spring 2012)]
*[http://www.cds.caltech.edu/~murray/wiki/CDS_212_Fall_2010 CDS 212, Feedback Control Theory (Fall 2010)]
*[[CDS 213|The Architecture of Robust, Evolvable Networks (Wi10)]]

== Contact ==
{| width=100%
|- valign=top
| width=50% |

'''Mailing Address'''

John Doyle 
California Institute of Technology 
Control and Dynamical Systems, MC 107-81 
1200 E. California Blvd 
Pasadena, CA 91125 USA
| width=50% |

'''Contact information'''

E-mail: doyle AT caltech dot edu 
Office: 210 Annenberg, 
Phone: 626.395.4808 

'''Admin Assistant''': Nikki Fountleroy 
Office: 107 Steele, 
Email: nikkif AT caltech dot edu 
Phone: 626.395.4140 
|-
|

===Other Caltech links===

*[http://www.caltech.edu California Institute of Technology]
**[http://www.eas.caltech.edu Engineering and Applied Science Division]
***[http://www.be.caltech.edu/ Bioengineering Department]
***[http://www.cds.caltech.edu Control and Dynamical Systems Department]
***[http://www.ee2.caltech.edu/ Electrical Engineering Department]
|}